RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CEP290O15078 2479 aa14.72□□□□□ -0.05
LIG3-209ENST00000586435 ATAD5Q96QE3 1844 aa14.71□□□□□ -0.05
LIG3-209ENST00000586435 A0A0G2JLL6 359 aaPredicted RBP14.71□□□□□ -0.05
LIG3-209ENST00000586435 A0A1B0GUL7 405 aa14.71□□□□□ -0.05
LIG3-209ENST00000586435 BCRP11274 1271 aa14.71□□□□□ -0.05
LIG3-209ENST00000586435 PSMC4P43686 418 aa14.71□□□□□ -0.05
LIG3-209ENST00000586435 MVPQ14764 893 aaKnown RBP14.71□□□□□ -0.05
LIG3-209ENST00000586435 SPTY2D1Q68D10 685 aaPredicted RBP14.71□□□□□ -0.05
LIG3-209ENST00000586435 PRRT2Q7Z6L0 340 aaPredicted RBP14.71□□□□□ -0.05
LIG3-209ENST00000586435 TRIM47Q96LD4 638 aa14.71□□□□□ -0.05
LIG3-209ENST00000586435 COL2A1P02458 1487 aaPredicted RBP14.7□□□□□ -0.06
LIG3-209ENST00000586435 MROH7-TTC4A0A0A0MT08 1334 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 SRGAP3O43295 1099 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 NPM3O75607 178 aaKnown RBP14.7□□□□□ -0.06
LIG3-209ENST00000586435 PTPRAP18433 802 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 OSBPP22059 807 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 TIMM10P62072 90 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 GPAT2Q6NUI2 795 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 SH3BP5LQ7L8J4 393 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 FASTKD5Q7L8L6 764 aaKnown RBP14.7□□□□□ -0.06
LIG3-209ENST00000586435 XAGE2Q96GT9 111 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 PICK1Q9NRD5 415 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 ABCF2Q9UG63 623 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 SLC45A1Q9Y2W3 748 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 LOC285556D6RIA3 1793 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 MAST2Q6P0Q8 1798 aa14.7□□□□□ -0.06
LIG3-209ENST00000586435 GPR75-ASB3A0A0A6YYF3 556 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 DDTLA6NHG4 134 aaPredicted RBP14.69□□□□□ -0.06
LIG3-209ENST00000586435 CCER2I3L3R5 266 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 MAP4K4O95819 1239 aaPredicted RBP14.69□□□□□ -0.06
LIG3-209ENST00000586435 GRK4P32298 578 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 BTDP43251 543 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 TFCP2Q12800 502 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 DDX4Q9NQI0 724 aaKnown RBP14.69□□□□□ -0.06
LIG3-209ENST00000586435 AFG3L2Q9Y4W6 797 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 ZHX2Q9Y6X8 837 aa14.69□□□□□ -0.06
LIG3-209ENST00000586435 MYPNQ86TC9 1320 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 DOCK3Q8IZD9 2030 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 TBC1D12O60347 775 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 CTNND1O60716 968 aaKnown RBP14.68□□□□□ -0.06
LIG3-209ENST00000586435 FMNL1O95466 1100 aaPredicted RBP14.68□□□□□ -0.06
LIG3-209ENST00000586435 FCGRTP55899 365 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 RHBDL3P58872 404 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 MECOMQ03112 1051 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 ERICH6Q7L0X2 663 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 ZSCAN29Q8IWY8 852 aaPredicted RBP14.68□□□□□ -0.06
LIG3-209ENST00000586435 NKX2-3Q8TAU0 364 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 RAET1EQ8TD07 263 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 SHISA4Q96DD7 197 aa14.68□□□□□ -0.06
LIG3-209ENST00000586435 CDK5RAP2Q96SN8 1893 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 FOCADQ5VW36 1801 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 MYCP01106 439 aaPredicted RBP14.67□□□□□ -0.06
LIG3-209ENST00000586435 CYP2C8P10632 490 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 ARID4AP29374 1257 aaPredicted RBP14.67□□□□□ -0.06
LIG3-209ENST00000586435 MTFR1Q15390 333 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 ZNF384Q8TF68 577 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 HMG20BQ9P0W2 317 aa14.67□□□□□ -0.06
LIG3-209ENST00000586435 IPO8O15397 1037 aaKnown RBP14.66□□□□□ -0.06
LIG3-209ENST00000586435 TRIM27P14373 513 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 GSTO1P78417 241 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 PRKCZQ05513 592 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 PICALMQ13492 652 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 SLAIN1Q8ND83 568 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 NSUN4Q96CB9 384 aaKnown RBP14.66□□□□□ -0.06
LIG3-209ENST00000586435 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.66□□□□□ -0.06
LIG3-209ENST00000586435 SIPA1L1O43166 1804 aa14.66□□□□□ -0.06
LIG3-209ENST00000586435 TRIOBPQ9H2D6 2365 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 GNAI2P04899 355 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 LDHCP07864 332 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 GJB1P08034 283 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 GJA8P48165 433 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 UBXN2AP68543 259 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 ATF7IPQ6VMQ6 1270 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 GADL1Q6ZQY3 521 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 SPATA5Q8NB90 893 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 TBC1D2Q9BYX2 928 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 OSBPL5Q9H0X9 879 aaPredicted RBP14.65□□□□□ -0.06
LIG3-209ENST00000586435 AGTPBP1Q9UPW5 1226 aa14.65□□□□□ -0.06
LIG3-209ENST00000586435 ECM2O94769 699 aaPredicted RBP14.64□□□□□ -0.07
LIG3-209ENST00000586435 CCL5P13501 91 aa14.64□□□□□ -0.07
LIG3-209ENST00000586435 UBE2Q1Q7Z7E8 422 aa14.64□□□□□ -0.07
LIG3-209ENST00000586435 NEUROD6Q96NK8 337 aa14.64□□□□□ -0.07
LIG3-209ENST00000586435 MYO5AQ9Y4I1 1855 aaKnown RBP14.63□□□□□ -0.07
LIG3-209ENST00000586435 PNMA6EA0A0J9YXQ4 647 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 TRIM75PA6NK02 468 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 UQCRFS1P1P0C7P4 283 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 SLURP2P0DP57 97 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 CAPN2P17655 700 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 MCAMP43121 646 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 FXR1P51114 621 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIG3-209ENST00000586435 IRF5Q13568 498 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 GORABQ5T7V8 394 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 PI16Q6UXB8 463 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 PROCA1Q8NCQ7 364 aaPredicted RBP14.63□□□□□ -0.07
LIG3-209ENST00000586435 PXYLP1Q8TE99 480 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 SMCR8Q8TEV9 937 aaPredicted RBP14.63□□□□□ -0.07
LIG3-209ENST00000586435 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIG3-209ENST00000586435 PNMA3Q9UL41 463 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 GABRQQ9UN88 632 aa14.63□□□□□ -0.07
LIG3-209ENST00000586435 IGSF3O75054 1194 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms