RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 ZNF512BQ96KM6 892 aaPredicted RBP34.43■■■■□ 3.1
LIG3-208ENST00000586407 ENTPD3O75355 529 aa34.41■■■■□ 3.1
LIG3-208ENST00000586407 LDHCP07864 332 aa34.41■■■■□ 3.1
LIG3-208ENST00000586407 HSP90AB4PQ58FF6 505 aa34.41■■■■□ 3.1
LIG3-208ENST00000586407 ATRNL1Q5VV63 1379 aa34.4■■■■□ 3.1
LIG3-208ENST00000586407 CDK5RAP2Q96SN8 1893 aa34.4■■■■□ 3.1
LIG3-208ENST00000586407 DDTLA6NHG4 134 aaPredicted RBP34.4■■■■□ 3.1
LIG3-208ENST00000586407 ZSCAN29Q8IWY8 852 aaPredicted RBP34.4■■■■□ 3.1
LIG3-208ENST00000586407 PTPN18Q99952 460 aa34.4■■■■□ 3.1
LIG3-208ENST00000586407 CHMP4BQ9H444 224 aaKnown RBP34.4■■■■□ 3.1
LIG3-208ENST00000586407 SPDYE5A6NIY4 337 aa34.39■■■■□ 3.1
LIG3-208ENST00000586407 NAA16Q6N069 864 aaPredicted RBP34.39■■■■□ 3.1
LIG3-208ENST00000586407 ADGRA1Q86SQ6 560 aa34.39■■■■□ 3.1
LIG3-208ENST00000586407 ZNF296Q8WUU4 475 aaPredicted RBP34.39■■■■□ 3.1
LIG3-208ENST00000586407 MS4A4AQ96JQ5 239 aa34.39■■■■□ 3.1
LIG3-208ENST00000586407 INHBEP58166 350 aa34.38■■■■□ 3.09
LIG3-208ENST00000586407 GPR25O00155 361 aa34.37■■■■□ 3.09
LIG3-208ENST00000586407 SH3RF3Q8TEJ3 882 aaPredicted RBP34.37■■■■□ 3.09
LIG3-208ENST00000586407 BRI3BPQ8WY22 251 aa34.37■■■■□ 3.09
LIG3-208ENST00000586407 KIF1BPQ96EK5 621 aa34.37■■■■□ 3.09
LIG3-208ENST00000586407 CCL15-CCL14A0A0B4J2E2 113 aa34.36■■■■□ 3.09
LIG3-208ENST00000586407 CCL15Q16663 113 aa34.36■■■■□ 3.09
LIG3-208ENST00000586407 ERO1BQ86YB8 467 aa34.36■■■■□ 3.09
LIG3-208ENST00000586407 ANTXR1Q9H6X2 564 aa34.36■■■■□ 3.09
LIG3-208ENST00000586407 AATFQ9NY61 560 aaKnown RBP eCLIP34.36■■■■□ 3.09
LIG3-208ENST00000586407 ZNF112Q9UJU3 913 aa34.36■■■■□ 3.09
LIG3-208ENST00000586407 TEX11Q8IYF3 940 aa34.35■■■■□ 3.09
LIG3-208ENST00000586407 TESPA1A2RU30 521 aaPredicted RBP34.34■■■■□ 3.09
LIG3-208ENST00000586407 ALDH1A1P00352 501 aa34.34■■■■□ 3.09
LIG3-208ENST00000586407 CLASRPQ8N2M8 674 aaKnown RBP34.34■■■■□ 3.09
LIG3-208ENST00000586407 IDH1O75874 414 aaKnown RBP34.33■■■■□ 3.09
LIG3-208ENST00000586407 CFHR5Q9BXR6 569 aa34.33■■■■□ 3.09
LIG3-208ENST00000586407 FOCADQ5VW36 1801 aa34.32■■■■□ 3.09
LIG3-208ENST00000586407 FAM196BA6NMK8 535 aa34.32■■■■□ 3.08
LIG3-208ENST00000586407 IRF6O14896 467 aa34.32■■■■□ 3.08
LIG3-208ENST00000586407 GTF2A2P52657 109 aa34.32■■■■□ 3.08
LIG3-208ENST00000586407 NOL10Q9BSC4 688 aaKnown RBP34.32■■■■□ 3.08
LIG3-208ENST00000586407 RAB11FIP3O75154 756 aa34.31■■■■□ 3.08
LIG3-208ENST00000586407 CRHR2Q13324 411 aa34.31■■■■□ 3.08
LIG3-208ENST00000586407 DOCK1Q14185 1865 aa34.31■■■■□ 3.08
LIG3-208ENST00000586407 SIPA1L1O43166 1804 aa34.3■■■■□ 3.08
LIG3-208ENST00000586407 PHF20L1A8MW92 1017 aa34.3■■■■□ 3.08
LIG3-208ENST00000586407 IFIT2P09913 472 aaKnown RBP34.3■■■■□ 3.08
LIG3-208ENST00000586407 DYNLL1P63167 89 aaKnown RBP34.3■■■■□ 3.08
LIG3-208ENST00000586407 PPIL2Q13356 520 aa34.3■■■■□ 3.08
LIG3-208ENST00000586407 CTU1Q7Z7A3 348 aaKnown RBP34.3■■■■□ 3.08
LIG3-208ENST00000586407 FAM43AQ8N2R8 423 aa34.3■■■■□ 3.08
LIG3-208ENST00000586407 CYP7A1P22680 504 aa34.29■■■■□ 3.08
LIG3-208ENST00000586407 RRP1P56182 461 aaKnown RBP34.29■■■■□ 3.08
LIG3-208ENST00000586407 OSBPL5Q9H0X9 879 aaPredicted RBP34.29■■■■□ 3.08
LIG3-208ENST00000586407 CCDC85CA6NKD9 419 aa34.28■■■■□ 3.08
LIG3-208ENST00000586407 SMARCA5O60264 1052 aaPredicted RBP34.28■■■■□ 3.08
LIG3-208ENST00000586407 FKTNO75072 461 aa34.28■■■■□ 3.08
LIG3-208ENST00000586407 NOL9Q5SY16 702 aaKnown RBP34.28■■■■□ 3.08
LIG3-208ENST00000586407 OTUD7BQ6GQQ9 843 aa34.28■■■■□ 3.08
LIG3-208ENST00000586407 NPM3O75607 178 aaKnown RBP34.27■■■■□ 3.08
LIG3-208ENST00000586407 BAG3O95817 575 aa34.27■■■■□ 3.08
LIG3-208ENST00000586407 PPATQ06203 517 aa34.27■■■■□ 3.08
LIG3-208ENST00000586407 MAPKAPK5Q8IW41 473 aa34.27■■■■□ 3.08
LIG3-208ENST00000586407 MAGEB6Q8N7X4 407 aa34.27■■■■□ 3.08
LIG3-208ENST00000586407 FRMD4AQ9P2Q2 1039 aaPredicted RBP34.27■■■■□ 3.08
LIG3-208ENST00000586407 MAP4K4O95819 1239 aaPredicted RBP34.26■■■■□ 3.08
LIG3-208ENST00000586407 SNAPC2Q13487 334 aa34.26■■■■□ 3.08
LIG3-208ENST00000586407 NOM1Q5C9Z4 860 aaKnown RBP34.26■■■■□ 3.08
LIG3-208ENST00000586407 MIGA1Q8NAN2 632 aa34.26■■■■□ 3.08
LIG3-208ENST00000586407 TGFBRAP1Q8WUH2 860 aa34.26■■■■□ 3.08
LIG3-208ENST00000586407 CETPP11597 493 aa34.25■■■■□ 3.07
LIG3-208ENST00000586407 PPP4CP60510 307 aa34.25■■■■□ 3.07
LIG3-208ENST00000586407 EDC3Q96F86 508 aaKnown RBP34.25■■■■□ 3.07
LIG3-208ENST00000586407 DNAJC2Q99543 621 aaKnown RBP34.25■■■■□ 3.07
LIG3-208ENST00000586407 COL2A1P02458 1487 aaPredicted RBP34.25■■■■□ 3.07
LIG3-208ENST00000586407 PHIPQ8WWQ0 1821 aa34.25■■■■□ 3.07
LIG3-208ENST00000586407 ATAD5Q96QE3 1844 aa34.25■■■■□ 3.07
LIG3-208ENST00000586407 MAP3K10Q02779 954 aa34.24■■■■□ 3.07
LIG3-208ENST00000586407 TAF1CQ15572 869 aaPredicted RBP34.24■■■■□ 3.07
LIG3-208ENST00000586407 BTBD19C9JJ37 291 aa34.23■■■■□ 3.07
LIG3-208ENST00000586407 CCDC84Q86UT8 332 aaPredicted RBP34.23■■■■□ 3.07
LIG3-208ENST00000586407 SCYL3Q8IZE3 742 aa34.23■■■■□ 3.07
LIG3-208ENST00000586407 GOLIM4O00461 696 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 PLCG2P16885 1265 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 LRRCC1Q9C099 1032 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 XPO5Q9HAV4 1204 aaKnown RBP eCLIP34.22■■■■□ 3.07
LIG3-208ENST00000586407 FLT1P17948 1338 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 PTPRFP10586 1907 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 MYH1P12882 1939 aa34.22■■■■□ 3.07
LIG3-208ENST00000586407 MAP3K12Q12852 859 aa34.21■■■■□ 3.07
LIG3-208ENST00000586407 PCDHB15Q9Y5E8 787 aa34.21■■■■□ 3.07
LIG3-208ENST00000586407 SLC4A8Q2Y0W8 1093 aa34.2■■■■□ 3.07
LIG3-208ENST00000586407 BOLA2Q9H3K6 86 aa34.2■■■■□ 3.07
LIG3-208ENST00000586407 PICK1Q9NRD5 415 aa34.2■■■■□ 3.07
LIG3-208ENST00000586407 SAP30BPQ9UHR5 308 aaKnown RBP34.2■■■■□ 3.07
LIG3-208ENST00000586407 KCNH4Q9UQ05 1017 aa34.2■■■■□ 3.07
LIG3-208ENST00000586407 PTPRAP18433 802 aa34.19■■■■□ 3.06
LIG3-208ENST00000586407 CD99L2Q8TCZ2 262 aa34.19■■■■□ 3.06
LIG3-208ENST00000586407 CRBNQ96SW2 442 aa34.19■■■■□ 3.06
LIG3-208ENST00000586407 ZHX2Q9Y6X8 837 aa34.19■■■■□ 3.06
LIG3-208ENST00000586407 ZSWIM8A7E2V4 1837 aa34.18■■■■□ 3.06
LIG3-208ENST00000586407 TBC1D12O60347 775 aa34.18■■■■□ 3.06
LIG3-208ENST00000586407 RRP1BQ14684 758 aaKnown RBP34.18■■■■□ 3.06
LIG3-208ENST00000586407 PPIL4Q8WUA2 492 aaKnown RBP eCLIP34.18■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms