RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 MIGA1Q8NAN2 632 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 SPOCK2Q92563 424 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 NSUN4Q96CB9 384 aaKnown RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 GPR101Q96P66 508 aaPredicted RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 PSMD1Q99460 953 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 KIF2CQ99661 725 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 KRT23Q9C075 422 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 ZNF287Q9HBT7 754 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 SPON1Q9HCB6 807 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.32□□□□□ -1.24
LIG3-206ENST00000586058 KIF3AQ9Y496 699 aa7.32□□□□□ -1.24
LIG3-206ENST00000586058 WDR19Q8NEZ3 1342 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 IRS2Q9Y4H2 1338 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 CYP21A2P08686 494 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 PCP11498 1178 aaKnown RBP7.31□□□□□ -1.24
LIG3-206ENST00000586058 DPEP1P16444 411 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 MCM5P33992 734 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 HAND2P61296 217 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 KIAA2012Q0VF49 1180 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 TTLL5Q6EMB2 1281 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 MFSD6Q6ZSS7 791 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 TXNRD3Q86VQ6 643 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 IFNL3Q8IZI9 196 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 LCORLQ8N3X6 602 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 LARGE2Q8N3Y3 721 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 SPRYD3Q8NCJ5 442 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 JDP2Q8WYK2 163 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 KCNB2Q92953 911 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 TEKT1Q969V4 418 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 STRBPQ96SI9 672 aaKnown RBP7.31□□□□□ -1.24
LIG3-206ENST00000586058 TAOK3Q9H2K8 898 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 DBNDD1Q9H9R9 158 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 CWC22Q9HCG8 908 aaKnown RBP7.31□□□□□ -1.24
LIG3-206ENST00000586058 ZSWIM6Q9HCJ5 1215 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 ATP8A2Q9NTI2 1148 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 AATFQ9NY61 560 aaKnown RBP eCLIP7.31□□□□□ -1.24
LIG3-206ENST00000586058 TMOD2Q9NZR1 351 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 HDAC9Q9UKV0 1011 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 CIZ1Q9ULV3 898 aaPredicted RBP7.31□□□□□ -1.24
LIG3-206ENST00000586058 NAP1L2Q9ULW6 460 aaPredicted RBP7.31□□□□□ -1.24
LIG3-206ENST00000586058 LIMCH1Q9UPQ0 1083 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 JAG2Q9Y219 1238 aa7.31□□□□□ -1.24
LIG3-206ENST00000586058 A0A0G2JLW4 131 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 USP17L3A6NCW0 530 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 USP17L4A6NCW7 530 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 E7EWF7 191 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 FGAP02671 866 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 PDIA4P13667 645 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 BTDP43251 543 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 SLC4A3P48751 1232 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 RBM5P52756 815 aaKnown RBP eCLIP7.3□□□□□ -1.24
LIG3-206ENST00000586058 AK2P54819 239 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 FKBP1AP62942 108 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 PDE4BQ07343 736 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 PDAP1Q13442 181 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 ALX1Q15699 326 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 AOC3Q16853 763 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 DOK7Q18PE1 504 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 STRIP1Q5VSL9 837 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 SYNE3Q6ZMZ3 975 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 DHX32Q7L7V1 743 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 USP17L1Q7RTZ2 530 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 INTS4Q96HW7 963 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 UBAC1Q9BSL1 405 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 RTFDC1Q9BY42 306 aaPredicted RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 PDGFDQ9GZP0 370 aaPredicted RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 CHMP5Q9NZZ3 219 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 TTF2Q9UNY4 1162 aaKnown RBP7.3□□□□□ -1.24
LIG3-206ENST00000586058 BCS1LQ9Y276 419 aa7.3□□□□□ -1.24
LIG3-206ENST00000586058 TCHHQ07283 1943 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 MINDY4BA8MYZ0 360 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 F8W031 263 aaPredicted RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 GOLGA6L22H0YM25 854 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 DHX16O60231 1041 aaKnown RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 CHGBP05060 677 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 PTMSP20962 102 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 IARSP41252 1262 aaKnown RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 NUCB2P80303 420 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 PPARAQ07869 468 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 ADCK5Q3MIX3 580 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 SLFNL1Q499Z3 407 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 RRP12Q5JTH9 1297 aaKnown RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 AKNAD1Q5T1N1 836 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 CPLX2Q6PUV4 134 aaKnown RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 NFXL1Q6ZNB6 911 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 IQCA1Q86XH1 822 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 TEX11Q8IYF3 940 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 OGFOD1Q8N543 542 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 SDR42E1Q8WUS8 393 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 ESR2Q92731 530 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 TMX3Q96JJ7 454 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 TMEM87BQ96K49 555 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 GBP4Q96PP9 640 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 RIOK1Q9BRS2 568 aaKnown RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 TRIM34Q9BYJ4 488 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 ALDH8A1Q9H2A2 487 aaPredicted RBP7.29□□□□□ -1.24
LIG3-206ENST00000586058 MCM9Q9NXL9 1143 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 SMC3Q9UQE7 1217 aa7.29□□□□□ -1.24
LIG3-206ENST00000586058 SNED1Q8TER0 1413 aa7.28□□□□□ -1.24
LIG3-206ENST00000586058 CCDC69A6NI79 296 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms