RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 TTC6Q86TZ1 520 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 MIGA1Q8NAN2 632 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 IGDCC4Q8TDY8 1250 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 LEO1Q8WVC0 666 aaPredicted RBP13.16□□□□□ -0.3
LIG3-204ENST00000585740 AKT1S1Q96B36 256 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 C8orf76Q96K31 380 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 RIOK1Q9BRS2 568 aaKnown RBP13.16□□□□□ -0.3
LIG3-204ENST00000585740 ANKIB1Q9P2G1 1089 aa13.16□□□□□ -0.3
LIG3-204ENST00000585740 CCDC69A6NI79 296 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 IFIT3O14879 490 aaKnown RBP13.15□□□□□ -0.3
LIG3-204ENST00000585740 PRKAB2O43741 272 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 BBOX1O75936 387 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 HSPA6P17066 643 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 GSTO1P78417 241 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 CTDSPL2Q05D32 466 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 PPP2R5BQ15173 497 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 APOA5Q6Q788 366 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 CERS3Q8IU89 383 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 FLAD1Q8NFF5 587 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 ESR2Q92731 530 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 NSUN4Q96CB9 384 aaKnown RBP13.15□□□□□ -0.3
LIG3-204ENST00000585740 CRNKL1Q9BZJ0 848 aaKnown RBP13.15□□□□□ -0.3
LIG3-204ENST00000585740 LY9Q9HBG7 655 aa13.15□□□□□ -0.3
LIG3-204ENST00000585740 GPHNQ9NQX3 736 aaPredicted RBP13.15□□□□□ -0.3
LIG3-204ENST00000585740 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
LIG3-204ENST00000585740 DLEC1Q9Y238 1755 aa13.15□□□□□ -0.31
LIG3-204ENST00000585740 STK36Q9NRP7 1315 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 LRRC37AA6NMS7 1700 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 GOLGA8AA7E2F4 631 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 KDM4AO75164 1064 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 SLC3A2P08195 630 aaKnown RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 FDPSP14324 419 aaKnown RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 HOXA10P31260 410 aaPredicted RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 CHAF1AQ13111 956 aaPredicted RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 WTAPQ15007 396 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 UVSSAQ2YD98 709 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 BRAPQ7Z569 592 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 CCDC24Q8N4L8 307 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 WASF1Q92558 559 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 CRAMP1Q96RY5 1269 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 PANK2Q9BZ23 570 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 GPBP1L1Q9HC44 474 aaPredicted RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 ATP8A2Q9NTI2 1148 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 DDX19AQ9NUU7 478 aaKnown RBP13.14□□□□□ -0.31
LIG3-204ENST00000585740 TFCP2L1Q9NZI6 479 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 SLC12A7Q9Y666 1083 aa13.14□□□□□ -0.31
LIG3-204ENST00000585740 ECM29Q5VYK3 1845 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 MYH2Q9UKX2 1941 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 CCDC196A0A1B0GTZ2 297 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 DTNBO60941 627 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 LDHCP07864 332 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 MECOMQ03112 1051 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 ADGRA1Q86SQ6 560 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 DZIP1Q86YF9 867 aaKnown RBP13.13□□□□□ -0.31
LIG3-204ENST00000585740 FBXO18Q8NFZ0 1043 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 TDRD7Q8NHU6 1098 aaKnown RBP13.13□□□□□ -0.31
LIG3-204ENST00000585740 PPP1R9BQ96SB3 815 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 TOMM22Q9NS69 142 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 ZSWIM5Q9P217 1185 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 RCOR1Q9UKL0 485 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 NRXN2Q9P2S2 1712 aa13.13□□□□□ -0.31
LIG3-204ENST00000585740 MYH6P13533 1939 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 KLRG2A4D1S0 409 aaPredicted RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 MINDY4BA8MYZ0 360 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 POLRMTO00411 1230 aaKnown RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 LDHBP07195 334 aaKnown RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 FGRP09769 529 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 KLRK1P26718 216 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 SBK1Q52WX2 424 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 RRP12Q5JTH9 1297 aaKnown RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 NLGN1Q8N2Q7 840 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 ZNF526Q8TF50 670 aaPredicted RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 NOL10Q9BSC4 688 aaKnown RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 UBAC1Q9BSL1 405 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 PODXL2Q9NZ53 605 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 TFIP11Q9UBB9 837 aaKnown RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 ARPP21Q9UBL0 812 aaPredicted RBP13.12□□□□□ -0.31
LIG3-204ENST00000585740 GGA1Q9UJY5 639 aa13.12□□□□□ -0.31
LIG3-204ENST00000585740 WTIPA6NIX2 430 aaPredicted RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 ADD1P35611 737 aaKnown RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 IARSP41252 1262 aaKnown RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 DYNLL1P63167 89 aaKnown RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 SSRP1Q08945 709 aaKnown RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 TRIM29Q14134 588 aa13.11□□□□□ -0.31
LIG3-204ENST00000585740 RTN1Q16799 776 aa13.11□□□□□ -0.31
LIG3-204ENST00000585740 FAM173BQ6P4H8 233 aa13.11□□□□□ -0.31
LIG3-204ENST00000585740 SDR42E1Q8WUS8 393 aa13.11□□□□□ -0.31
LIG3-204ENST00000585740 TRIM44Q96DX7 344 aaPredicted RBP13.11□□□□□ -0.31
LIG3-204ENST00000585740 NUP62CLQ9H1M0 184 aa13.11□□□□□ -0.31
LIG3-204ENST00000585740 ANKRD31Q8N7Z5 1873 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 ORC4O43929 436 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 UFL1O94874 794 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 YEATS4O95619 227 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 BAG3O95817 575 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 CALM1P0DP23 149 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 CALM2P0DP24 149 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 CALM3P0DP25 149 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 IFNAR1P17181 557 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 FOSBP53539 338 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms