RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 CDK5RAP2Q96SN8 1893 aa11.87□□□□□ -0.51
SMCHD1-212ENST00000585229 CCDC171Q6TFL3 1326 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 FOCADQ5VW36 1801 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 USP17L3A6NCW0 530 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 USP17L4A6NCW7 530 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 MAP3K7O43318 606 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 LDHBP07195 334 aaKnown RBP11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 COL9A1P20849 921 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 PRELPP51888 382 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 MFAP1P55081 439 aaKnown RBP11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 GTF2IP78347 998 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 SLFNL1Q499Z3 407 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 MFSD14BQ5SR56 506 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 DACT2Q5SW24 774 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 C6orf132Q5T0Z8 1188 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 DMRTA1Q5VZB9 504 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 TTLL5Q6EMB2 1281 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 SMYD5Q6GMV2 418 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 USP17L1Q7RTZ2 530 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 ZNF589Q86UQ0 364 aaPredicted RBP11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 LARGE2Q8N3Y3 721 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 CERS5Q8N5B7 392 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 MAGEB6Q8N7X4 407 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 USP26Q9BXU7 913 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 LSG1Q9H089 658 aaKnown RBP11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 ABCF2Q9UG63 623 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 GAKO14976 1311 aa11.86□□□□□ -0.51
SMCHD1-212ENST00000585229 M0R2C6 588 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 RASSF7Q02833 373 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 MECOMQ03112 1051 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 GRIK5Q16478 980 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 NAA16Q6N069 864 aaPredicted RBP11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 NIM1KQ8IY84 436 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 IL17RAQ96F46 866 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 TBC1D32Q96NH3 1257 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 SEC62Q99442 399 aaKnown RBP11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 MRIQ9BWK5 157 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 PUS7LQ9H0K6 701 aaKnown RBP11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 RAI14Q9P0K7 980 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 ZNRF3Q9ULT6 936 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 JAG2Q9Y219 1238 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 ECM29Q5VYK3 1845 aa11.85□□□□□ -0.51
SMCHD1-212ENST00000585229 ADAMTSL1Q8N6G6 1762 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 RPAP1Q9BWH6 1393 aaPredicted RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 DDX60LQ5H9U9 1706 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 ARHGAP33O14559 1287 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 VIL1P09327 827 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 YBX3P16989 372 aaKnown RBP eCLIP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 CYP7A1P22680 504 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 PTPREP23469 700 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 PBX2P40425 430 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 RBM25P49756 843 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 GSTO1P78417 241 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 ADGRA1Q86SQ6 560 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 DZIP1Q86YF9 867 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 DSCC1Q9BVC3 393 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 UPF2Q9HAU5 1272 aaKnown RBP11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 KCNQ5Q9NR82 932 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 MROH7-TTC4A0A0A0MT08 1334 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 MYO3BQ8WXR4 1341 aa11.84□□□□□ -0.51
SMCHD1-212ENST00000585229 LAMB1P07942 1786 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 FZD9O00144 591 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 FOXP2O15409 715 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 GPAA1O43292 621 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 HDLBPQ00341 1268 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 PTH1RQ03431 593 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 CCDC129Q6ZRS4 1044 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 CERS3Q8IU89 383 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 MAP4K1Q92918 833 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 KCNB2Q92953 911 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 STRBPQ96SI9 672 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 GMLQ99445 158 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 RIOK1Q9BRS2 568 aaKnown RBP11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 ANO2Q9NQ90 1003 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 ZMYM6O95789 1325 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 NAV1Q8NEY1 1877 aa11.83□□□□□ -0.52
SMCHD1-212ENST00000585229 LDHCP07864 332 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 HSPD1P10809 573 aaKnown RBP11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 LMNB1P20700 586 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 HSPA4P34932 840 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 PPP4CP60510 307 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 RSBN1LQ6PCB5 846 aaPredicted RBP11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 HHIPL2Q6UWX4 724 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 SLF2Q8IX21 1173 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 JDP2Q8WYK2 163 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 C22orf23Q9BZE7 217 aa11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 NPDC1Q9NQX5 325 aaPredicted RBP11.82□□□□□ -0.52
SMCHD1-212ENST00000585229 GPR75-ASB3A0A0A6YYF3 556 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 MAGEB6P1A0A0J9YX57 407 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 PSMD14O00487 310 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 MBD4O95243 580 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 GNAT2P19087 354 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 MMP14P50281 582 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 CXCL9Q07325 125 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 ALX1Q15699 326 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 KIAA1211Q6ZU35 1233 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 ARHGAP27Q6ZUM4 889 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 LCORLQ8N3X6 602 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 AGBL3Q8NEM8 1001 aa11.81□□□□□ -0.52
SMCHD1-212ENST00000585229 AIDAQ96BJ3 306 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms