RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 GMPRP36959 345 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 EPS15P42566 896 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 SEMA3FQ13275 785 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 CYP4F22Q6NT55 531 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 LARGE2Q8N3Y3 721 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 RPGRQ92834 1020 aaKnown RBP13.04□□□□□ -0.32
SS18-221ENST00000582448 IRF7Q92985 503 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 DOLKQ9UPQ8 538 aa13.04□□□□□ -0.32
SS18-221ENST00000582448 SLC35F4A4IF30 521 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 RAD21O60216 631 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 GPTP24298 496 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 RNF144AP50876 292 aaPredicted RBP13.03□□□□□ -0.32
SS18-221ENST00000582448 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
SS18-221ENST00000582448 NFE2L2Q16236 605 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 TRMT2AQ8IZ69 625 aaKnown RBP13.03□□□□□ -0.32
SS18-221ENST00000582448 CAPNS2Q96L46 248 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 GPR101Q96P66 508 aaPredicted RBP13.03□□□□□ -0.32
SS18-221ENST00000582448 NYXQ9GZU5 481 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 SCN4AP35499 1836 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 IL16Q14005 1332 aa13.03□□□□□ -0.32
SS18-221ENST00000582448 TRAF5O00463 557 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 MYL6BP14649 208 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 SOX11P35716 441 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 ECE1P42892 770 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 IRX6P78412 446 aaPredicted RBP13.02□□□□□ -0.33
SS18-221ENST00000582448 TAF7Q15545 349 aaPredicted RBP13.02□□□□□ -0.33
SS18-221ENST00000582448 SLC51AQ86UW1 340 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 PSMD1Q99460 953 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 ARHGEF10LQ9HCE6 1279 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 RAB6BQ9NRW1 208 aa13.02□□□□□ -0.33
SS18-221ENST00000582448 POM121CA8CG34 1229 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 PIK3CDO00329 1044 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 NIM1KQ8IY84 436 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 CCDC155Q8N6L0 562 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 RBM17Q96I25 401 aaKnown RBP13.01□□□□□ -0.33
SS18-221ENST00000582448 ALG2Q9H553 416 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 PPP4R2Q9NY27 417 aa13.01□□□□□ -0.33
SS18-221ENST00000582448 ABCC12Q96J65 1359 aa13□□□□□ -0.33
SS18-221ENST00000582448 AOC2O75106 756 aa13□□□□□ -0.33
SS18-221ENST00000582448 VSIG8P0DPA2 414 aa13□□□□□ -0.33
SS18-221ENST00000582448 SCNN1DP51172 638 aa13□□□□□ -0.33
SS18-221ENST00000582448 OXLD1Q5BKU9 147 aa13□□□□□ -0.33
SS18-221ENST00000582448 SUSD4Q5VX71 490 aa13□□□□□ -0.33
SS18-221ENST00000582448 CST9Q5W186 159 aa13□□□□□ -0.33
SS18-221ENST00000582448 KIF6Q6ZMV9 814 aa13□□□□□ -0.33
SS18-221ENST00000582448 TTLL7Q6ZT98 887 aa13□□□□□ -0.33
SS18-221ENST00000582448 LYSMD3Q7Z3D4 306 aa13□□□□□ -0.33
SS18-221ENST00000582448 PRICKLE2Q7Z3G6 844 aa13□□□□□ -0.33
SS18-221ENST00000582448 TMX4Q9H1E5 349 aaPredicted RBP13□□□□□ -0.33
SS18-221ENST00000582448 PPIP5K2O43314 1243 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 STAU1O95793 577 aaKnown RBP12.99□□□□□ -0.33
SS18-221ENST00000582448 MYCP01106 439 aaPredicted RBP12.99□□□□□ -0.33
SS18-221ENST00000582448 CT47B1P0C2W7 299 aaPredicted RBP12.99□□□□□ -0.33
SS18-221ENST00000582448 CLN3Q13286 438 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 AOC3Q16853 763 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 CRY2Q49AN0 593 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 USP50Q70EL3 339 aaPredicted RBP12.99□□□□□ -0.33
SS18-221ENST00000582448 CLUAP1Q96AJ1 413 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 ZNF408Q9H9D4 720 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 SIPA1L3O60292 1781 aaPredicted RBP12.99□□□□□ -0.33
SS18-221ENST00000582448 BCORQ6W2J9 1755 aa12.99□□□□□ -0.33
SS18-221ENST00000582448 MAP3K15Q6ZN16 1313 aa12.98□□□□□ -0.33
SS18-221ENST00000582448 ERVV-1B6SEH8 477 aa12.98□□□□□ -0.33
SS18-221ENST00000582448 RHOQP17081 205 aa12.98□□□□□ -0.33
SS18-221ENST00000582448 MLLT1Q03111 559 aaPredicted RBP12.98□□□□□ -0.33
SS18-221ENST00000582448 ADAMTS19Q8TE59 1207 aa12.98□□□□□ -0.33
SS18-221ENST00000582448 ARFGEF2Q9Y6D5 1785 aa12.98□□□□□ -0.33
SS18-221ENST00000582448 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
SS18-221ENST00000582448 CELF2O95319 508 aaKnown RBP12.97□□□□□ -0.33
SS18-221ENST00000582448 GNRH1P01148 92 aa12.97□□□□□ -0.33
SS18-221ENST00000582448 IL2RAP01589 272 aa12.97□□□□□ -0.33
SS18-221ENST00000582448 GPC1P35052 558 aa12.97□□□□□ -0.33
SS18-221ENST00000582448 GNAI1P63096 354 aa12.97□□□□□ -0.33
SS18-221ENST00000582448 PLPP7Q8NBV4 271 aa12.97□□□□□ -0.33
SS18-221ENST00000582448 UBN2Q6ZU65 1347 aa12.96□□□□□ -0.33
SS18-221ENST00000582448 HOXA10P31260 410 aaPredicted RBP12.96□□□□□ -0.33
SS18-221ENST00000582448 USP4Q13107 963 aa12.96□□□□□ -0.33
SS18-221ENST00000582448 PPP1R42Q7Z4L9 355 aa12.96□□□□□ -0.33
SS18-221ENST00000582448 GPR161Q8N6U8 529 aaKnown RBP12.96□□□□□ -0.33
SS18-221ENST00000582448 NLRP3Q96P20 1036 aa12.96□□□□□ -0.33
SS18-221ENST00000582448 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.33
SS18-221ENST00000582448 GLIS2Q9BZE0 524 aaPredicted RBP12.96□□□□□ -0.33
SS18-221ENST00000582448 ADARB2Q9NS39 739 aaKnown RBP12.96□□□□□ -0.33
SS18-221ENST00000582448 ADAMTSL1Q8N6G6 1762 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 CXCL9Q07325 125 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 THUMPD2Q9BTF0 503 aaKnown RBP12.95□□□□□ -0.34
SS18-221ENST00000582448 BCL2L13Q9BXK5 485 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 GRIP2Q9C0E4 1043 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 GPRC5DQ9NZD1 345 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 HRH3Q9Y5N1 445 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 COL4A5P29400 1685 aa12.95□□□□□ -0.34
SS18-221ENST00000582448 FANCIQ9NVI1 1328 aa12.94□□□□□ -0.34
SS18-221ENST00000582448 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
SS18-221ENST00000582448 MAP2K2P36507 400 aa12.94□□□□□ -0.34
SS18-221ENST00000582448 GMPSP49915 693 aaPredicted RBP12.94□□□□□ -0.34
SS18-221ENST00000582448 EIF4A1P60842 406 aaKnown RBP12.94□□□□□ -0.34
SS18-221ENST00000582448 IFT57Q9NWB7 429 aa12.94□□□□□ -0.34
SS18-221ENST00000582448 ZNRF3Q9ULT6 936 aa12.94□□□□□ -0.34
SS18-221ENST00000582448 LAS1LQ9Y4W2 734 aaKnown RBP12.94□□□□□ -0.34
SS18-221ENST00000582448 RAD17O75943 681 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms