RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.43□□□□□ -0.42
SS18-217ENST00000580958 CYP2D7A0A087X1C5 515 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 MINDY4BA8MYZ0 360 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 B4E1Z4 1266 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 C21orf2O43822 256 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 PPARAQ07869 468 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 PKP1Q13835 747 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 AKNAD1Q5T1N1 836 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 GIMAP6Q6P9H5 292 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 CYB5R4Q7L1T6 521 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 MS4A3Q96HJ5 214 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 NOL10Q9BSC4 688 aaKnown RBP12.42□□□□□ -0.42
SS18-217ENST00000580958 AGXT2Q9BYV1 514 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 GPHNQ9NQX3 736 aaPredicted RBP12.42□□□□□ -0.42
SS18-217ENST00000580958 SMC3Q9UQE7 1217 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 MYH6P13533 1939 aa12.42□□□□□ -0.42
SS18-217ENST00000580958 WDR19Q8NEZ3 1342 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 DTNBO60941 627 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 BAG3O95817 575 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 KCNA3P22001 575 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 PPP4CP60510 307 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 MFSD6Q6ZSS7 791 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 STK11IPQ8N1F8 1099 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 SUPT20HQ8NEM7 779 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 SH3RF3Q8TEJ3 882 aaPredicted RBP12.41□□□□□ -0.42
SS18-217ENST00000580958 STAG1Q8WVM7 1258 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 GTF3C6Q969F1 213 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 MXD3Q9BW11 206 aa12.41□□□□□ -0.42
SS18-217ENST00000580958 GAKO14976 1311 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 PSDA5PKW4 1024 aaPredicted RBP12.4□□□□□ -0.42
SS18-217ENST00000580958 SMIM22K7EJ46 135 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 ECE2O60344 883 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 PFKFB2O60825 505 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 CYP2D6P10635 497 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 GJB2P29033 226 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 BTDP43251 543 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 AOC3Q16853 763 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 CCDC93Q567U6 631 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 RRP12Q5JTH9 1297 aaKnown RBP12.4□□□□□ -0.42
SS18-217ENST00000580958 CTR9Q6PD62 1173 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 SLF2Q8IX21 1173 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 FBXL16Q8N461 479 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 CERS5Q8N5B7 392 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 KRT23Q9C075 422 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 RNF41Q9H4P4 317 aaPredicted RBP12.4□□□□□ -0.42
SS18-217ENST00000580958 CNNM2Q9H8M5 875 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 DCP1AQ9NPI6 582 aaPredicted RBP12.4□□□□□ -0.42
SS18-217ENST00000580958 TOMM22Q9NS69 142 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 ATP8A2Q9NTI2 1148 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 ANAPC4Q9UJX5 808 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 NAP1L2Q9ULW6 460 aaPredicted RBP12.4□□□□□ -0.42
SS18-217ENST00000580958 ZDHHC9Q9Y397 364 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 MYH15Q9Y2K3 1946 aa12.4□□□□□ -0.42
SS18-217ENST00000580958 ARFGEF1Q9Y6D6 1849 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 GPR75-ASB3A0A0A6YYF3 556 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 USP17L12C9JPN9 530 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 USP17L21D6R901 530 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 F8W031 263 aaPredicted RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 SH2B2O14492 632 aaPredicted RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 KDM4AO75164 1064 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 USP5P45974 858 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 KIAA2012Q0VF49 1180 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 FOXD4L5Q5VV16 416 aaPredicted RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 PODNQ7Z5L7 613 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 FOXD4L4Q8WXT5 416 aaPredicted RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 FAM163AQ96GL9 167 aaPredicted RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 KCNQ5Q9NR82 932 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 TTF2Q9UNY4 1162 aaKnown RBP12.39□□□□□ -0.43
SS18-217ENST00000580958 SUGT1Q9Y2Z0 365 aa12.39□□□□□ -0.43
SS18-217ENST00000580958 KLF18A0A0U1RQI7 1052 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 PPIP5K2O43314 1243 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 BRD1O95696 1058 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 USP17L8P0C7I0 530 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 PDIA3P30101 505 aaKnown RBP12.38□□□□□ -0.43
SS18-217ENST00000580958 MCM4P33991 863 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 TGFB2P61812 414 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 CCT2P78371 535 aaKnown RBP12.38□□□□□ -0.43
SS18-217ENST00000580958 SCRN1Q12765 414 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 GRIPAP1Q4V328 841 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 SBK1Q52WX2 424 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 TEX11Q8IYF3 940 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 TGFBRAP1Q8WUH2 860 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 ZNF274Q96GC6 653 aaPredicted RBP12.38□□□□□ -0.43
SS18-217ENST00000580958 TMEM87BQ96K49 555 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 ARPP21Q9UBL0 812 aaPredicted RBP12.38□□□□□ -0.43
SS18-217ENST00000580958 BRPF3Q9ULD4 1205 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 DAGLAQ9Y4D2 1042 aa12.38□□□□□ -0.43
SS18-217ENST00000580958 PLCG2P16885 1265 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 EVCP57679 992 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 TMEM67Q5HYA8 995 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 DACT2Q5SW24 774 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 CERS3Q8IU89 383 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 MAPKAPK5Q8IW41 473 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 RTKN2Q8IZC4 609 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 KLHL34Q8N239 644 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 GBP4Q96PP9 640 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 PSMD1Q99460 953 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 SGIP1Q9BQI5 828 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 MCM9Q9NXL9 1143 aa12.37□□□□□ -0.43
SS18-217ENST00000580958 PIM2Q9P1W9 311 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms