RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TMEM87AQ8NBN3 555 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 EZH1Q92800 747 aaPredicted RBP10.82□□□□□ -0.68
SS18-214ENST00000580003 ELMO3Q96BJ8 720 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 ACSS3Q9H6R3 686 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 PICK1Q9NRD5 415 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 DISC1Q9NRI5 854 aa10.82□□□□□ -0.68
SS18-214ENST00000580003 RNGTTO60942 597 aaKnown RBP10.81□□□□□ -0.68
SS18-214ENST00000580003 IGLV1-40P01703 118 aa10.81□□□□□ -0.68
SS18-214ENST00000580003 ERVK-24P63145 666 aa10.81□□□□□ -0.68
SS18-214ENST00000580003 MIR1-1HGQ9H1L0 117 aa10.81□□□□□ -0.68
SS18-214ENST00000580003 PCDHB5Q9Y5E4 795 aa10.81□□□□□ -0.68
SS18-214ENST00000580003 DCDC2CA8MYV0 355 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 NFIAQ12857 509 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 GAL3ST3Q96A11 431 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 DBNDD2Q9BQY9 259 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 RSRP1Q9BUV0 290 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 SEMA6CQ9H3T2 930 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 TLR6Q9Y2C9 796 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 DAGLAQ9Y4D2 1042 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 CSADQ9Y600 493 aa10.8□□□□□ -0.68
SS18-214ENST00000580003 TFE3P19532 575 aaPredicted RBP10.79□□□□□ -0.68
SS18-214ENST00000580003 GBP2P32456 591 aaPredicted RBP10.79□□□□□ -0.68
SS18-214ENST00000580003 SEPT6Q14141 434 aa10.79□□□□□ -0.68
SS18-214ENST00000580003 TTLL4Q14679 1199 aa10.79□□□□□ -0.68
SS18-214ENST00000580003 SMYD4Q8IYR2 804 aaPredicted RBP10.79□□□□□ -0.68
SS18-214ENST00000580003 PHC3Q8NDX5 983 aa10.79□□□□□ -0.68
SS18-214ENST00000580003 SSU72Q9NP77 194 aaKnown RBP10.79□□□□□ -0.68
SS18-214ENST00000580003 F6X3S4 739 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 HCLS1P14317 486 aaPredicted RBP10.78□□□□□ -0.68
SS18-214ENST00000580003 ITGB7P26010 798 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 PTPN11Q06124 597 aaPredicted RBP10.78□□□□□ -0.68
SS18-214ENST00000580003 TSNAXIP1Q2TAA8 658 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 HDXQ7Z353 690 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 C12orf40Q86WS4 652 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 RNF214Q8ND24 703 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 GIMAP7Q8NHV1 300 aa10.78□□□□□ -0.68
SS18-214ENST00000580003 PPM1JQ5JR12 505 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 HS2ST1Q7LGA3 356 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 MFSD14AQ96MC6 490 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 TMEM74Q96NL1 305 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 BACH2Q9BYV9 841 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 GGT7Q9UJ14 662 aa10.77□□□□□ -0.69
SS18-214ENST00000580003 INPP5AQ14642 412 aa10.76□□□□□ -0.69
SS18-214ENST00000580003 JARID2Q92833 1246 aaPredicted RBP10.76□□□□□ -0.69
SS18-214ENST00000580003 LGR6Q9HBX8 967 aa10.76□□□□□ -0.69
SS18-214ENST00000580003 PCOLCE2Q9UKZ9 415 aa10.76□□□□□ -0.69
SS18-214ENST00000580003 SNCAIPQ9Y6H5 919 aa10.76□□□□□ -0.69
SS18-214ENST00000580003 VAMP1P23763 118 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 LMNB2Q03252 620 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 CAMK2GQ13555 558 aaPredicted RBP10.75□□□□□ -0.69
SS18-214ENST00000580003 WIPI1Q5MNZ9 446 aaPredicted RBP10.75□□□□□ -0.69
SS18-214ENST00000580003 LRFN4Q6PJG9 635 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.75□□□□□ -0.69
SS18-214ENST00000580003 FBXL6Q8N531 539 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 MRRFQ96E11 262 aaKnown RBP10.75□□□□□ -0.69
SS18-214ENST00000580003 PLPPR2Q96GM1 343 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 TBC1D32Q96NH3 1257 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 PRKAG2Q9UGJ0 569 aa10.75□□□□□ -0.69
SS18-214ENST00000580003 PRAMEF27A3QJZ7 478 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 MINDY4BA8MYZ0 360 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 FANCGO15287 622 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 PF4P02776 101 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 NEFMP07197 916 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 CDC37L1Q7L3B6 337 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 ERMP1Q7Z2K6 904 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 CCDC84Q86UT8 332 aaPredicted RBP10.74□□□□□ -0.69
SS18-214ENST00000580003 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.74□□□□□ -0.69
SS18-214ENST00000580003 ISL2Q96A47 359 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 ATG3Q9NT62 314 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 KBTBD4Q9NVX7 518 aa10.74□□□□□ -0.69
SS18-214ENST00000580003 WDR64B1ANS9 1081 aa10.73□□□□□ -0.69
SS18-214ENST00000580003 ZNF76P36508 570 aa10.73□□□□□ -0.69
SS18-214ENST00000580003 SHKBP1Q8TBC3 707 aa10.73□□□□□ -0.69
SS18-214ENST00000580003 DYNC1LI2O43237 492 aaPredicted RBP10.72□□□□□ -0.69
SS18-214ENST00000580003 RING1Q06587 406 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 SNAP47Q5SQN1 464 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 ZBTB37Q5TC79 503 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 CYFIP1Q7L576 1253 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 ZAR1Q86SH2 424 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 KCT2Q8NC54 265 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 RHOVQ96L33 236 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 COPRSQ9NQ92 184 aa10.72□□□□□ -0.69
SS18-214ENST00000580003 BPNT1O95861 308 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 FAM160A1Q05DH4 1040 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 ZMYM1Q5SVZ6 1142 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 LDLRAD1Q5T700 205 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 SEZ6L2Q6UXD5 910 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 ZNF507Q8TCN5 953 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 OSBPL1AQ9BXW6 950 aa10.71□□□□□ -0.69
SS18-214ENST00000580003 METTL5Q9NRN9 209 aaKnown RBP10.71□□□□□ -0.69
SS18-214ENST00000580003 RECKO95980 971 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 F13BP05160 661 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 CDK8P49336 464 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 ETF1P62495 437 aaKnown RBP10.7□□□□□ -0.7
SS18-214ENST00000580003 RPL6Q02878 288 aaKnown RBP10.7□□□□□ -0.7
SS18-214ENST00000580003 BNC2Q6ZN30 1099 aaPredicted RBP10.7□□□□□ -0.7
SS18-214ENST00000580003 ZDHHC13Q8IUH4 622 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 C1GALT1Q9NS00 363 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 RNF112Q9ULX5 631 aa10.7□□□□□ -0.7
SS18-214ENST00000580003 SCAMP3O14828 347 aaKnown RBP10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms