RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RHBDL3P58872 404 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 AAMPQ13685 434 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 ADGRA1Q86SQ6 560 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 MIGA1Q8NAN2 632 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 EDC3Q96F86 508 aaKnown RBP23.67■■□□□ 1.38
SS18-209ENST00000578595 ZNF341Q9BYN7 854 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 DDX4Q9NQI0 724 aaKnown RBP23.67■■□□□ 1.38
SS18-209ENST00000578595 PAG1Q9NWQ8 432 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 CASP8AP2Q9UKL3 1982 aa23.67■■□□□ 1.38
SS18-209ENST00000578595 ATAD5Q96QE3 1844 aa23.66■■□□□ 1.38
SS18-209ENST00000578595 WNK4Q96J92 1243 aa23.66■■□□□ 1.38
SS18-209ENST00000578595 ECHDC1Q9NTX5 307 aa23.66■■□□□ 1.38
SS18-209ENST00000578595 LAMB1P07942 1786 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 IGSF3O75054 1194 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 LBX1P52954 281 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 DYNLL1P63167 89 aaKnown RBP23.65■■□□□ 1.38
SS18-209ENST00000578595 MAP3K9P80192 1104 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 VGLL4Q14135 290 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 SPRYD7Q5W111 196 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 TSHZ3Q63HK5 1081 aa23.65■■□□□ 1.38
SS18-209ENST00000578595 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.65■■□□□ 1.38
SS18-209ENST00000578595 DOCK1Q14185 1865 aa23.64■■□□□ 1.38
SS18-209ENST00000578595 UNCXA6NJT0 531 aa23.64■■□□□ 1.37
SS18-209ENST00000578595 MAP4K4O95819 1239 aaPredicted RBP23.64■■□□□ 1.37
SS18-209ENST00000578595 SREBF2Q12772 1141 aa23.64■■□□□ 1.37
SS18-209ENST00000578595 SLC9C2Q5TAH2 1124 aa23.64■■□□□ 1.37
SS18-209ENST00000578595 ANKRD45Q5TZF3 282 aa23.64■■□□□ 1.37
SS18-209ENST00000578595 CA12O43570 354 aa23.63■■□□□ 1.37
SS18-209ENST00000578595 HSPA8P11142 646 aaKnown RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 MAPKAPK5Q8IW41 473 aa23.63■■□□□ 1.37
SS18-209ENST00000578595 REM2Q8IYK8 340 aaPredicted RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 TGFBRAP1Q8WUH2 860 aa23.63■■□□□ 1.37
SS18-209ENST00000578595 ZKSCAN4Q969J2 545 aaPredicted RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 OPTNQ96CV9 577 aa23.63■■□□□ 1.37
SS18-209ENST00000578595 HAUS7Q99871 368 aa23.63■■□□□ 1.37
SS18-209ENST00000578595 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.63■■□□□ 1.37
SS18-209ENST00000578595 OSBPL5Q9H0X9 879 aaPredicted RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 RWDD1Q9H446 243 aaPredicted RBP23.63■■□□□ 1.37
SS18-209ENST00000578595 DDTLA6NHG4 134 aaPredicted RBP23.62■■□□□ 1.37
SS18-209ENST00000578595 TRPA1O75762 1119 aa23.62■■□□□ 1.37
SS18-209ENST00000578595 ZBTB48P10074 688 aaPredicted RBP23.62■■□□□ 1.37
SS18-209ENST00000578595 PDE6AP16499 860 aa23.62■■□□□ 1.37
SS18-209ENST00000578595 USP5P45974 858 aa23.62■■□□□ 1.37
SS18-209ENST00000578595 HDAC1Q13547 482 aaPredicted RBP23.62■■□□□ 1.37
SS18-209ENST00000578595 GCC1Q96CN9 775 aa23.62■■□□□ 1.37
SS18-209ENST00000578595 OTUD5Q96G74 571 aa23.62■■□□□ 1.37
SS18-209ENST00000578595 INPP5BP32019 993 aa23.61■■□□□ 1.37
SS18-209ENST00000578595 PPP4CP60510 307 aa23.61■■□□□ 1.37
SS18-209ENST00000578595 SH3BP5LQ7L8J4 393 aa23.61■■□□□ 1.37
SS18-209ENST00000578595 CNKSR2Q8WXI2 1034 aa23.61■■□□□ 1.37
SS18-209ENST00000578595 MYH8P13535 1937 aa23.61■■□□□ 1.37
SS18-209ENST00000578595 ZNF532Q9HCE3 1301 aa23.6■■□□□ 1.37
SS18-209ENST00000578595 MAGEB6P1A0A0J9YX57 407 aa23.6■■□□□ 1.37
SS18-209ENST00000578595 MANSC4A6NHS7 340 aaPredicted RBP23.6■■□□□ 1.37
SS18-209ENST00000578595 SLC4A8Q2Y0W8 1093 aa23.6■■□□□ 1.37
SS18-209ENST00000578595 TRIM34Q9BYJ4 488 aa23.6■■□□□ 1.37
SS18-209ENST00000578595 SIPA1L1O43166 1804 aa23.6■■□□□ 1.37
SS18-209ENST00000578595 BAZ2AQ9UIF9 1905 aaKnown RBP23.6■■□□□ 1.37
SS18-209ENST00000578595 FLT1P17948 1338 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 FAM196BA6NMK8 535 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 B4GALNT3Q6L9W6 998 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 CERS3Q8IU89 383 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 RNF186Q9NXI6 227 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 SAP30BPQ9UHR5 308 aaKnown RBP23.59■■□□□ 1.37
SS18-209ENST00000578595 SNCAIPQ9Y6H5 919 aa23.59■■□□□ 1.37
SS18-209ENST00000578595 COL2A1P02458 1487 aaPredicted RBP23.59■■□□□ 1.37
SS18-209ENST00000578595 ATRNL1Q5VV63 1379 aa23.58■■□□□ 1.37
SS18-209ENST00000578595 ERC2O15083 957 aa23.58■■□□□ 1.37
SS18-209ENST00000578595 NPM3O75607 178 aaKnown RBP23.58■■□□□ 1.37
SS18-209ENST00000578595 GJA5P36382 358 aa23.58■■□□□ 1.37
SS18-209ENST00000578595 TMED8Q6PL24 325 aaPredicted RBP23.58■■□□□ 1.37
SS18-209ENST00000578595 OTUD7AQ8TE49 926 aaPredicted RBP23.58■■□□□ 1.37
SS18-209ENST00000578595 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.58■■□□□ 1.37
SS18-209ENST00000578595 SLURP2P0DP57 97 aa23.57■■□□□ 1.36
SS18-209ENST00000578595 MX1P20591 662 aa23.57■■□□□ 1.36
SS18-209ENST00000578595 COL13A1Q5TAT6 717 aaPredicted RBP23.57■■□□□ 1.36
SS18-209ENST00000578595 ERO1BQ86YB8 467 aa23.57■■□□□ 1.36
SS18-209ENST00000578595 CRACR2BQ8N4Y2 399 aaPredicted RBP23.57■■□□□ 1.36
SS18-209ENST00000578595 TTC41PQ6P2S7 1318 aa23.57■■□□□ 1.36
SS18-209ENST00000578595 SPDYE5A6NIY4 337 aa23.56■■□□□ 1.36
SS18-209ENST00000578595 HLA-DOAP06340 250 aa23.56■■□□□ 1.36
SS18-209ENST00000578595 ZSCAN25Q6NSZ9 544 aa23.56■■□□□ 1.36
SS18-209ENST00000578595 SAGE1Q9NXZ1 904 aa23.56■■□□□ 1.36
SS18-209ENST00000578595 ADD2P35612 726 aa23.55■■□□□ 1.36
SS18-209ENST00000578595 CRNKL1Q9BZJ0 848 aaKnown RBP23.55■■□□□ 1.36
SS18-209ENST00000578595 LNPKQ9C0E8 428 aa23.55■■□□□ 1.36
SS18-209ENST00000578595 DHX36Q9H2U1 1008 aaKnown RBP23.55■■□□□ 1.36
SS18-209ENST00000578595 PRDM10Q9NQV6 1147 aa23.55■■□□□ 1.36
SS18-209ENST00000578595 PICK1Q9NRD5 415 aa23.55■■□□□ 1.36
SS18-209ENST00000578595 PALD1Q9ULE6 856 aa23.55■■□□□ 1.36
SS18-209ENST00000578595 DDX60LQ5H9U9 1706 aaKnown RBP23.54■■□□□ 1.36
SS18-209ENST00000578595 TM4SF4P48230 202 aa23.54■■□□□ 1.36
SS18-209ENST00000578595 SLFNL1Q499Z3 407 aa23.54■■□□□ 1.36
SS18-209ENST00000578595 ZNF112Q9UJU3 913 aa23.54■■□□□ 1.36
SS18-209ENST00000578595 PTPRFP10586 1907 aa23.54■■□□□ 1.36
SS18-209ENST00000578595 CCL15-CCL14A0A0B4J2E2 113 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 GLRX3O76003 335 aaKnown RBP23.53■■□□□ 1.36
SS18-209ENST00000578595 MBD4O95243 580 aa23.53■■□□□ 1.36
SS18-209ENST00000578595 TBC1D8O95759 1140 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms