RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 CHMLP26374 656 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 FMR1Q06787 632 aaKnown RBP eCLIP10.3□□□□□ -0.76
NUP88-211ENST00000575976 TCP10Q12799 353 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 PICALMQ13492 652 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 RASA3Q14644 834 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 MCMDC2Q4G0Z9 681 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 FKBP1CQ5VVH2 108 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 PRAMEF18Q5VWM3 479 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 CCDC129Q6ZRS4 1044 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 CERS3Q8IU89 383 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 SULF1Q8IWU6 871 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 ZFPM1Q8IX07 1006 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 ABHD8Q96I13 439 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 STRBPQ96SI9 672 aaKnown RBP10.3□□□□□ -0.76
NUP88-211ENST00000575976 DEFB129Q9H1M3 183 aa10.3□□□□□ -0.76
NUP88-211ENST00000575976 MYH7P12883 1935 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 TRAF5O00463 557 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 ENTPD3O75355 529 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 ITGBL1O95965 494 aaPredicted RBP10.29□□□□□ -0.76
NUP88-211ENST00000575976 USP5P45974 858 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 TNNI2P48788 182 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 TNFAIP1Q13829 316 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 ZNF589Q86UQ0 364 aaPredicted RBP10.29□□□□□ -0.76
NUP88-211ENST00000575976 FAM83AQ86UY5 434 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 MAPKAPK5Q8IW41 473 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 SDR42E1Q8WUS8 393 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 FAM151AQ8WW52 585 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 CRNKL1Q9BZJ0 848 aaKnown RBP10.29□□□□□ -0.76
NUP88-211ENST00000575976 TMEM39BQ9GZU3 492 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 IL25Q9H293 177 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 SLC4A4Q9Y6R1 1079 aa10.29□□□□□ -0.76
NUP88-211ENST00000575976 NPM3O75607 178 aaKnown RBP10.28□□□□□ -0.76
NUP88-211ENST00000575976 SH3BP5LQ7L8J4 393 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 CDAN1Q8IWY9 1227 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 CDCA5Q96FF9 252 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 TEPSINQ96N21 525 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 OSBPL5Q9H0X9 879 aaPredicted RBP10.28□□□□□ -0.76
NUP88-211ENST00000575976 PPP2R3BQ9Y5P8 575 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 FLT1P17948 1338 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 ECM29Q5VYK3 1845 aa10.28□□□□□ -0.76
NUP88-211ENST00000575976 POLR2AP24928 1970 aaKnown RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 DDTLA6NHG4 134 aaPredicted RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 GSG1L2A8MUP6 293 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 PATL2C9JE40 543 aaKnown RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 CDC45O75419 566 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 GNAT2P19087 354 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 RGS19P49795 217 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 LBX1P52954 281 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 NBPF12Q5TAG4 269 aaPredicted RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 VPS53Q5VIR6 699 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 ZSCAN29Q8IWY8 852 aaPredicted RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 RUFY2Q8WXA3 655 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 DCP1AQ9NPI6 582 aaPredicted RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 ATP8A2Q9NTI2 1148 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 SAP30BPQ9UHR5 308 aaKnown RBP10.27□□□□□ -0.77
NUP88-211ENST00000575976 CCDC171Q6TFL3 1326 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 AK9Q5TCS8 1911 aa10.27□□□□□ -0.77
NUP88-211ENST00000575976 FOXP2O15409 715 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 SGSM2O43147 1006 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 APPP05067 770 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 SLURP2P0DP57 97 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 MAP2K1Q02750 393 aaPredicted RBP10.26□□□□□ -0.77
NUP88-211ENST00000575976 SLC4A8Q2Y0W8 1093 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 IFNL3Q8IZI9 196 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 ESYT1Q9BSJ8 1104 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 EPB41L4AQ9HCS5 686 aaPredicted RBP10.26□□□□□ -0.77
NUP88-211ENST00000575976 WBP1LQ9NX94 342 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 MCM9Q9NXL9 1143 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 PALD1Q9ULE6 856 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 RAD50Q92878 1312 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 PASKQ96RG2 1323 aa10.26□□□□□ -0.77
NUP88-211ENST00000575976 CCDC85CA6NKD9 419 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 USP17L12C9JPN9 530 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 USP17L21D6R901 530 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 POLR3DP05423 398 aaPredicted RBP10.25□□□□□ -0.77
NUP88-211ENST00000575976 CYP2D6P10635 497 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 HSPD1P10809 573 aaKnown RBP10.25□□□□□ -0.77
NUP88-211ENST00000575976 MFAP1P55081 439 aaKnown RBP10.25□□□□□ -0.77
NUP88-211ENST00000575976 EVX2Q03828 476 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 SUPT20HL1Q3ZLR7 823 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 DHX36Q9H2U1 1008 aaKnown RBP10.25□□□□□ -0.77
NUP88-211ENST00000575976 ZNF408Q9H9D4 720 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 FZD1Q9UP38 647 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 ATRNL1Q5VV63 1379 aa10.25□□□□□ -0.77
NUP88-211ENST00000575976 RPAP1Q9BWH6 1393 aaPredicted RBP10.25□□□□□ -0.77
NUP88-211ENST00000575976 SSC5DA1L4H1 1573 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 CYP2D7A0A087X1C5 515 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 TMEM88BA6NKF7 163 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 SMIM22K7EJ46 135 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 CELF2O95319 508 aaKnown RBP10.24□□□□□ -0.77
NUP88-211ENST00000575976 TDO2P48775 406 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 PLCD1P51178 756 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 PRKG1Q13976 671 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 CST9Q5W186 159 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 GIMAP6Q6P9H5 292 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 CTR9Q6PD62 1173 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 CASC1Q6TDU7 716 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 MIGA2Q7L4E1 593 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 TTC6Q86TZ1 520 aa10.24□□□□□ -0.77
NUP88-211ENST00000575976 DDRGK1Q96HY6 314 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms