RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 BPNT1O95861 308 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 SLC4A3P48751 1232 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 RIPK4P57078 832 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 RAPGEF1Q13905 1077 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 PPP2R5AQ15172 486 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 GPR162Q16538 588 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 LYPD8Q6UX82 237 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 DDX54Q8TDD1 881 aaKnown RBP8.46□□□□□ -1.06
VPS53-217ENST00000575100 ZDHHC16Q969W1 377 aa8.46□□□□□ -1.06
VPS53-217ENST00000575100 THUMPD2Q9BTF0 503 aaKnown RBP8.46□□□□□ -1.06
VPS53-217ENST00000575100 G3V3G9 751 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 FAM163BP0C2L3 166 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 POU5F1Q01860 360 aaKnown RBP8.45□□□□□ -1.06
VPS53-217ENST00000575100 DCTN1Q14203 1278 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 HLTFQ14527 1009 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS53-217ENST00000575100 TTF1Q15361 905 aaPredicted RBP8.45□□□□□ -1.06
VPS53-217ENST00000575100 TKFCQ3LXA3 575 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 UBR3Q6ZT12 1888 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 TSEN2Q8NCE0 465 aaKnown RBP8.45□□□□□ -1.06
VPS53-217ENST00000575100 FAM126AQ9BYI3 521 aaPredicted RBP8.45□□□□□ -1.06
VPS53-217ENST00000575100 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.45□□□□□ -1.06
VPS53-217ENST00000575100 NIF3L1Q9GZT8 377 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 TSKSQ9UJT2 592 aa8.45□□□□□ -1.06
VPS53-217ENST00000575100 SLC10A3P09131 477 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 DEKP35659 375 aaKnown RBP8.44□□□□□ -1.06
VPS53-217ENST00000575100 TMEM95Q3KNT9 176 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 NLGN2Q8NFZ4 835 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 OCSTAMPQ9BR26 566 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 TFCP2L1Q9NZI6 479 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 V9GY48 417 aaPredicted RBP8.44□□□□□ -1.06
VPS53-217ENST00000575100 C4BP0C0L5 1744 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 HMGB2P26583 209 aaKnown RBP8.44□□□□□ -1.06
VPS53-217ENST00000575100 SQSTM1Q13501 440 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 LRRC41Q15345 812 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 C10orf62Q5T681 223 aaPredicted RBP8.44□□□□□ -1.06
VPS53-217ENST00000575100 ERMP1Q7Z2K6 904 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 CXorf38Q8TB03 319 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 DNAJC7Q99615 494 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 KLF15Q9UIH9 416 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 CCNL1Q9UK58 526 aaPredicted RBP8.44□□□□□ -1.06
VPS53-217ENST00000575100 MSRB2Q9Y3D2 182 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 DLG5Q8TDM6 1919 aa8.44□□□□□ -1.06
VPS53-217ENST00000575100 GRIN3BO60391 1043 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 CDC27P30260 824 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 RASSF7Q02833 373 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 ICE2Q659A1 982 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 COL23A1Q86Y22 540 aaPredicted RBP8.43□□□□□ -1.06
VPS53-217ENST00000575100 GAS2L2Q8NHY3 880 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 ADAM33Q9BZ11 813 aa8.43□□□□□ -1.06
VPS53-217ENST00000575100 PNNQ9H307 717 aaKnown RBP8.43□□□□□ -1.06
VPS53-217ENST00000575100 BMP2KQ9NSY1 1161 aaPredicted RBP8.43□□□□□ -1.06
VPS53-217ENST00000575100 NAP1L2Q9ULW6 460 aaPredicted RBP8.43□□□□□ -1.06
VPS53-217ENST00000575100 ESPNB1AK53 854 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 M0R2N6 131 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 PTMAP06454 111 aaKnown RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 KCNQ4P56696 695 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 PPP4R4Q6NUP7 873 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 MCM10Q7L590 875 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 RETREG3Q86VR2 466 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 C1orf131Q8NDD1 294 aaKnown RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 HNRNPLLQ8WVV9 542 aaKnown RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 SYTL4Q96C24 671 aaPredicted RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 DOLKQ9UPQ8 538 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 LZTS1Q9Y250 596 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 GPSM3Q9Y4H4 160 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 PCDHB9Q9Y5E1 797 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 POTEMA6NI47 508 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 YBX3P16989 372 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS53-217ENST00000575100 IRX5P78411 483 aaPredicted RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 SLFN5Q08AF3 891 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 DUSP27Q5VZP5 1158 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 ALKBH2Q6NS38 261 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 KCNG1Q9UIX4 513 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 TPX2Q9ULW0 747 aaKnown RBP8.42□□□□□ -1.06
VPS53-217ENST00000575100 MRVI1Q9Y6F6 885 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 ADCY9O60503 1353 aa8.42□□□□□ -1.06
VPS53-217ENST00000575100 CICQ96RK0 1608 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 CCDC85CA6NKD9 419 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 TBX3O15119 743 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 SCGB1D2O95969 90 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 NASPP49321 788 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 TRMT2AQ8IZ69 625 aaKnown RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 FLAD1Q8NFF5 587 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 EMID1Q96A84 441 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 CD2APQ9Y5K6 639 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 KIF13BQ9NQT8 1826 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 NBPF26B4DH59 902 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 F12P00748 615 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 EIF4BP23588 611 aaKnown RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 CTHP32929 405 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 INO80DQ53TQ3 878 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 DALRD3Q5D0E6 543 aaKnown RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 RNF20Q5VTR2 975 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.41□□□□□ -1.06
VPS53-217ENST00000575100 IL17REQ8NFR9 667 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 TATDN2Q93075 761 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 SAP130Q9H0E3 1048 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 INTUQ9ULD6 942 aa8.41□□□□□ -1.06
VPS53-217ENST00000575100 PCDH11XQ9BZA7 1347 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 PCDH11YQ9BZA8 1340 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms