RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TTLL11Q8NHH1 800 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 NUP133Q8WUM0 1156 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 MAP3K14Q99558 947 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 ARMT1Q9H993 441 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 KCND1Q9NSA2 647 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 ZSWIM5Q9P217 1185 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 A0A0G2JS52 829 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 POLR2DO15514 142 aaKnown RBP19.64■□□□□ 0.73
VPS53-215ENST00000573028 IL2RBP14784 551 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 EVA1CP58658 441 aa19.64■□□□□ 0.73
VPS53-215ENST00000573028 MBD4O95243 580 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 VSTM4Q8IW00 320 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 MAGEB6Q8N7X4 407 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 BMP6P22004 513 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 SAFBQ15424 915 aaKnown RBP eCLIP19.63■□□□□ 0.73
VPS53-215ENST00000573028 DIS3L2Q8IYB7 885 aaKnown RBP19.63■□□□□ 0.73
VPS53-215ENST00000573028 KRI1Q8N9T8 703 aaKnown RBP19.63■□□□□ 0.73
VPS53-215ENST00000573028 IGDCC4Q8TDY8 1250 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 LY9Q9HBG7 655 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 KIF1AQ12756 1690 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 IRS4O14654 1257 aaPredicted RBP19.63■□□□□ 0.73
VPS53-215ENST00000573028 CUTAO60888 179 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 GNG11P61952 73 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 NFE2L3Q9Y4A8 694 aa19.63■□□□□ 0.73
VPS53-215ENST00000573028 SPATA31A3Q5VYP0 1347 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 WDR17Q8IZU2 1322 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 CSF1RP07333 972 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 PRR29P0C7W0 189 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 TTF1Q15361 905 aaPredicted RBP19.62■□□□□ 0.73
VPS53-215ENST00000573028 NTRK3Q16288 839 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 ZBTB9Q96C00 473 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 FAM217BQ9NTX9 383 aaPredicted RBP19.62■□□□□ 0.73
VPS53-215ENST00000573028 PRKAB2O43741 272 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 NR5A1Q13285 461 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 CCDC93Q567U6 631 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 DESI2Q9BSY9 194 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 SERTAD1Q9UHV2 236 aa19.62■□□□□ 0.73
VPS53-215ENST00000573028 FANCGO15287 622 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 CCP110O43303 1012 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 BMS1Q14692 1282 aaKnown RBP19.61■□□□□ 0.73
VPS53-215ENST00000573028 TMEM87BQ96K49 555 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 MST1RQ04912 1400 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 KLHL10Q6JEL2 608 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 TRIM65Q6PJ69 517 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 NOSTRINQ8IVI9 506 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 STRBPQ96SI9 672 aaKnown RBP19.61■□□□□ 0.73
VPS53-215ENST00000573028 INTS13Q9NVM9 706 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 FBXO3Q9UK99 471 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 PPP2R2CQ9Y2T4 447 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 SEC31AO94979 1220 aaKnown RBP19.61■□□□□ 0.73
VPS53-215ENST00000573028 TDO2P48775 406 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 CTSWP56202 376 aa19.61■□□□□ 0.73
VPS53-215ENST00000573028 FMR1Q06787 632 aaKnown RBP eCLIP19.61■□□□□ 0.734e-8■■■■■ 46.3
VPS53-215ENST00000573028 BAG1Q99933 345 aaPredicted RBP19.61■□□□□ 0.73
VPS53-215ENST00000573028 TNS3Q68CZ2 1445 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 POLR3GO15318 223 aaPredicted RBP19.6■□□□□ 0.73
VPS53-215ENST00000573028 PDE8BO95263 885 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 H2AFXP16104 143 aaPredicted RBP19.6■□□□□ 0.73
VPS53-215ENST00000573028 KARSQ15046 597 aaKnown RBP19.6■□□□□ 0.73
VPS53-215ENST00000573028 NLRP10Q86W26 655 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 REXO1L1PQ8IX06 675 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 IFNL3Q8IZI9 196 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 RIC1Q4ADV7 1423 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 POSTNQ15063 836 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 UBE3CQ15386 1083 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 TMCO3Q6UWJ1 677 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 MIGA1Q8NAN2 632 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 CPLX3Q8WVH0 158 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 EPB41L4AQ9HCS5 686 aaPredicted RBP19.6■□□□□ 0.73
VPS53-215ENST00000573028 MAN1B1Q9UKM7 699 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 WDR19Q8NEZ3 1342 aa19.6■□□□□ 0.73
VPS53-215ENST00000573028 ZSCAN12O43309 604 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 STARD3NLO95772 234 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 DHX8Q14562 1220 aaKnown RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 TEX35Q5T0J7 233 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 USP49Q70CQ1 688 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 CADPS2Q86UW7 1296 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 TRIM22Q8IYM9 498 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 ZSWIM4Q9H7M6 989 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 TJP1Q07157 1748 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 hCG_1642624A0A1W2PR95 340 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 MFSD6Q6ZSS7 791 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 HOOK1Q9UJC3 728 aaKnown RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 IQSEC3Q9UPP2 1182 aaPredicted RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 PCDHB6Q9Y5E3 794 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 ALS2Q96Q42 1657 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 GIGYF2Q6Y7W6 1299 aaKnown RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 TOGARAM2Q6ZUX3 1019 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 SMARCE1Q969G3 411 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 WDR24Q96S15 920 aa19.59■□□□□ 0.73
VPS53-215ENST00000573028 SAMSN1Q9NSI8 373 aaKnown RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 ARGLU1Q9NWB6 273 aaPredicted RBP19.59■□□□□ 0.73
VPS53-215ENST00000573028 KCNJ6P48051 423 aa19.58■□□□□ 0.73
VPS53-215ENST00000573028 TOB1P50616 345 aaPredicted RBP19.58■□□□□ 0.73
VPS53-215ENST00000573028 STX17P56962 302 aa19.58■□□□□ 0.73
VPS53-215ENST00000573028 GLI3P10071 1580 aa19.58■□□□□ 0.73
VPS53-215ENST00000573028 PNMA6AP0CW24 399 aaPredicted RBP19.58■□□□□ 0.72
VPS53-215ENST00000573028 CASQ1P31415 396 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 AFMP43652 599 aa19.58■□□□□ 0.72
VPS53-215ENST00000573028 TRIM28Q13263 835 aaKnown RBP19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms