RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TTC14Q96N46 770 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 GBP4Q96PP9 640 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 STRBPQ96SI9 672 aaKnown RBP9.44□□□□□ -0.9
VPS39-213ENST00000570062 NOL10Q9BSC4 688 aaKnown RBP9.44□□□□□ -0.9
VPS39-213ENST00000570062 ZC3H12CQ9C0D7 883 aaKnown RBP9.44□□□□□ -0.9
VPS39-213ENST00000570062 VPS33BQ9H267 617 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 ABCF2Q9UG63 623 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 KIF3AQ9Y496 699 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 NDUFB9Q9Y6M9 179 aa9.44□□□□□ -0.9
VPS39-213ENST00000570062 C4AP0C0L4 1744 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 MAGEB6P1A0A0J9YX57 407 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 GOLGA6L22H0YM25 854 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 DHX16O60231 1041 aaKnown RBP9.43□□□□□ -0.9
VPS39-213ENST00000570062 UFL1O94874 794 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 FGAP02671 866 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 APPP05067 770 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 SLC3A2P08195 630 aaKnown RBP9.43□□□□□ -0.9
VPS39-213ENST00000570062 CYP21A2P08686 494 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 IL1R1P14778 569 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 PDCP20941 246 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 CYP7A1P22680 504 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 MCM5P33992 734 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 GPSM2P81274 684 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 SOGA3Q5TF21 947 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 RALYLQ86SE5 291 aaKnown RBP9.43□□□□□ -0.9
VPS39-213ENST00000570062 LAPTM4BQ86VI4 370 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 C2CD5Q86YS7 1000 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 NCOA7Q8NI08 942 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 TBC1D16Q8TBP0 767 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 SEC62Q99442 399 aaKnown RBP9.43□□□□□ -0.9
VPS39-213ENST00000570062 PUS7LQ9H0K6 701 aaKnown RBP9.43□□□□□ -0.9
VPS39-213ENST00000570062 NAPBQ9H115 298 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 ATP8A2Q9NTI2 1148 aa9.43□□□□□ -0.9
VPS39-213ENST00000570062 C6orf229H3BNL8 230 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 M0R2C6 588 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 LDHBP07195 334 aaKnown RBP9.42□□□□□ -0.9
VPS39-213ENST00000570062 DDIT3P35638 169 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 AK2P54819 239 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 CAMK2BQ13554 666 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 C6orf132Q5T0Z8 1188 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 DPP8Q6V1X1 898 aaPredicted RBP9.42□□□□□ -0.9
VPS39-213ENST00000570062 CCDC129Q6ZRS4 1044 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 PODNQ7Z5L7 613 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 DZIP1Q86YF9 867 aaKnown RBP9.42□□□□□ -0.9
VPS39-213ENST00000570062 AMOTL1Q8IY63 956 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 TMTC2Q8N394 836 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 CCDC24Q8N4L8 307 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 RGS22Q8NE09 1264 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 EPAS1Q99814 870 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 UPF3BQ9BZI7 483 aaKnown RBP9.42□□□□□ -0.9
VPS39-213ENST00000570062 KRT23Q9C075 422 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 SLKQ9H2G2 1235 aaPredicted RBP9.42□□□□□ -0.9
VPS39-213ENST00000570062 CD209Q9NNX6 404 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 KIAA1468Q9P260 1216 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 ATP6V1DQ9Y5K8 247 aa9.42□□□□□ -0.9
VPS39-213ENST00000570062 FAM205AQ6ZU69 1335 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 IRS2Q9Y4H2 1338 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 DDX11L8A8MPP1 907 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 E7EWF7 191 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 POLD1P28340 1107 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 FKBP1AP62942 108 aaKnown RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 SART3Q15020 963 aaKnown RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 PI16Q6UXB8 463 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 RTKN2Q8IZC4 609 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 IFNL3Q8IZI9 196 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 ZNF622Q969S3 477 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS39-213ENST00000570062 NSUN4Q96CB9 384 aaKnown RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 ZNF274Q96GC6 653 aaPredicted RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 TMEM87BQ96K49 555 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 LLPHQ9BRT6 129 aaKnown RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 MRIQ9BWK5 157 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 CRNKL1Q9BZJ0 848 aaKnown RBP9.41□□□□□ -0.9
VPS39-213ENST00000570062 ZNF287Q9HBT7 754 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 WWC3Q9ULE0 1092 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 SLC4A4Q9Y6R1 1079 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 ARAP2Q8WZ64 1704 aa9.41□□□□□ -0.9
VPS39-213ENST00000570062 WDR33Q9C0J8 1336 aaKnown RBP9.4□□□□□ -0.9
VPS39-213ENST00000570062 SNAP23O00161 211 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 DPYSL4O14531 572 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 MBD4O95243 580 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 TDO2P48775 406 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 PPP4CP60510 307 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 TGFB2P61812 414 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 RAB3GAP1Q15042 981 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 PPP2R5BQ15173 497 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 CLEC17AQ6ZS10 378 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 ZFRQ96KR1 1074 aaKnown RBP9.4□□□□□ -0.9
VPS39-213ENST00000570062 RTFDC1Q9BY42 306 aaPredicted RBP9.4□□□□□ -0.9
VPS39-213ENST00000570062 AGXT2Q9BYV1 514 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 IRX2Q9BZI1 471 aaPredicted RBP9.4□□□□□ -0.9
VPS39-213ENST00000570062 ANAPC4Q9UJX5 808 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 SMC3Q9UQE7 1217 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 DUOX1Q9NRD9 1551 aa9.4□□□□□ -0.9
VPS39-213ENST00000570062 TNS1Q9HBL0 1735 aaKnown RBP9.39□□□□□ -0.91
VPS39-213ENST00000570062 AK9Q5TCS8 1911 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 SOWAHBA6NEL2 793 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 CD2BP2O95400 341 aaKnown RBP9.39□□□□□ -0.91
VPS39-213ENST00000570062 MMP14P50281 582 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 EVCP57679 992 aa9.39□□□□□ -0.91
VPS39-213ENST00000570062 EXOSC10Q01780 885 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms