RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FLT1P17948 1338 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 TRAF5O00463 557 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 SGSM2O43147 1006 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 ZSCAN25Q6NSZ9 544 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 FAM83AQ86UY5 434 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 SLF2Q8IX21 1173 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 SDR42E1Q8WUS8 393 aa11.2□□□□□ -0.62
VPS35-211ENST00000569950 GREB1LQ9C091 1923 aaPredicted RBP11.19□□□□□ -0.62
VPS35-211ENST00000569950 DDTLA6NHG4 134 aaPredicted RBP11.19□□□□□ -0.62
VPS35-211ENST00000569950 TCP10L2B9ZVM9 353 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 ENTPD3O75355 529 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 RASA3Q14644 834 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 PRAMEF18Q5VWM3 479 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 CHADLQ6NUI6 762 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 CWC27Q6UX04 472 aaKnown RBP11.19□□□□□ -0.62
VPS35-211ENST00000569950 TEX11Q8IYF3 940 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 TMEM39BQ9GZU3 492 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 DCP1AQ9NPI6 582 aaPredicted RBP11.19□□□□□ -0.62
VPS35-211ENST00000569950 TACC3Q9Y6A5 838 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 MYH8P13535 1937 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 PHIPQ8WWQ0 1821 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 ATAD5Q96QE3 1844 aa11.19□□□□□ -0.62
VPS35-211ENST00000569950 CCDC171Q6TFL3 1326 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 TOMM70O94826 608 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 BAG3O95817 575 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 MAP3K10Q02779 954 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 MCMDC2Q4G0Z9 681 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 USP48Q86UV5 1035 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 APOBEC3FQ8IUX4 373 aaKnown RBP11.18□□□□□ -0.62
VPS35-211ENST00000569950 MAPKAPK5Q8IW41 473 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 RBM46Q8TBY0 533 aaKnown RBP11.18□□□□□ -0.62
VPS35-211ENST00000569950 TGFBRAP1Q8WUH2 860 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 FAM151AQ8WW52 585 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 ESYT1Q9BSJ8 1104 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 NBPF3Q9H094 633 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 OSBPL5Q9H0X9 879 aaPredicted RBP11.18□□□□□ -0.62
VPS35-211ENST00000569950 DEFB129Q9H1M3 183 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 DNAJC18Q9H819 358 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 VEZTQ9HBM0 779 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 CEP350Q5VT06 3117 aa11.18□□□□□ -0.62
VPS35-211ENST00000569950 RAD50Q92878 1312 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 CYP2D7A0A087X1C5 515 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 CDC45O75419 566 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 CYP2D6P10635 497 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 PLCG2P16885 1265 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 PTH1RQ03431 593 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 TCP10Q12799 353 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 C8orf34Q49A92 452 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 NBPF12Q5TAG4 269 aaPredicted RBP11.17□□□□□ -0.62
VPS35-211ENST00000569950 KRT26Q7Z3Y9 468 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
VPS35-211ENST00000569950 NKX2-3Q8TAU0 364 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 AIDAQ96BJ3 306 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 LSG1Q9H089 658 aaKnown RBP11.17□□□□□ -0.62
VPS35-211ENST00000569950 DIAPH3Q9NSV4 1193 aa11.17□□□□□ -0.62
VPS35-211ENST00000569950 ZMYM6O95789 1325 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 HIP1O00291 1037 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 HSPD1P10809 573 aaKnown RBP11.16□□□□□ -0.62
VPS35-211ENST00000569950 PLCD1P51178 756 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 GABPAQ06546 454 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 PICALMQ13492 652 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 RRP1BQ14684 758 aaKnown RBP11.16□□□□□ -0.62
VPS35-211ENST00000569950 ALX1Q15699 326 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 LRRFIP1Q32MZ4 808 aaKnown RBP11.16□□□□□ -0.62
VPS35-211ENST00000569950 CST9Q5W186 159 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 CTR9Q6PD62 1173 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 CDC37L1Q7L3B6 337 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 CERS3Q8IU89 383 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 DCPSQ96C86 337 aaKnown RBP11.16□□□□□ -0.62
VPS35-211ENST00000569950 CDCA5Q96FF9 252 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 CRNKL1Q9BZJ0 848 aaKnown RBP11.16□□□□□ -0.62
VPS35-211ENST00000569950 PALD1Q9ULE6 856 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 FZD1Q9UP38 647 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 TAF6LQ9Y6J9 622 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 SLC4A4Q9Y6R1 1079 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 DOCK1Q14185 1865 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 ROBO3Q96MS0 1386 aa11.16□□□□□ -0.62
VPS35-211ENST00000569950 PATL2C9JE40 543 aaKnown RBP11.15□□□□□ -0.62
VPS35-211ENST00000569950 MYO1BO43795 1136 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 JAG1P78504 1218 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 C12orf60Q5U649 245 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 GIMAP6Q6P9H5 292 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 IFNL3Q8IZI9 196 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 ATP8A2Q9NTI2 1148 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 SAP30BPQ9UHR5 308 aaKnown RBP11.15□□□□□ -0.62
VPS35-211ENST00000569950 CLEC11AQ9Y240 323 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 PPP2R3BQ9Y5P8 575 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 PTPRFP10586 1907 aa11.15□□□□□ -0.62
VPS35-211ENST00000569950 FAM196BA6NMK8 535 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 PHF20L1A8MW92 1017 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 USP17L12C9JPN9 530 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 USP17L21D6R901 530 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 SEC24BO95487 1268 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 FGAP02671 866 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 TNFAIP1Q13829 316 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 COL9A3Q14050 684 aaPredicted RBP11.14□□□□□ -0.63
VPS35-211ENST00000569950 SHROOM1Q2M3G4 852 aaPredicted RBP11.14□□□□□ -0.63
VPS35-211ENST00000569950 SLC4A8Q2Y0W8 1093 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 SBK1Q52WX2 424 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 SULF1Q8IWU6 871 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms