RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 PTPN21Q16825 1174 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 HSP90AA4PQ58FG1 418 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 C3orf67Q6ZVT6 689 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 CEP57L1Q8IYX8 460 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 PIAS4Q8N2W9 510 aaPredicted RBP10.14□□□□□ -0.79
LINC00558-201ENST00000569422 KCNG4Q8TDN1 519 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 IGDCC4Q8TDY8 1250 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 LY9Q9HBG7 655 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 ZMYM6O95789 1325 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 NPHP1O15259 732 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 RANBP6O60518 1105 aaKnown RBP10.14□□□□□ -0.79
LINC00558-201ENST00000569422 CAMTA2O94983 1202 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 SMC2O95347 1197 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 SLC3A2P08195 630 aaKnown RBP10.14□□□□□ -0.79
LINC00558-201ENST00000569422 PFKFB1P16118 471 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 FAM98CQ17RN3 349 aaKnown RBP10.14□□□□□ -0.79
LINC00558-201ENST00000569422 ERFEQ4G0M1 354 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 PLA2G4DQ86XP0 818 aa10.14□□□□□ -0.79
LINC00558-201ENST00000569422 TRMT1Q9NXH9 659 aaKnown RBP10.14□□□□□ -0.79
LINC00558-201ENST00000569422 NUP188Q5SRE5 1749 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 TOGARAM1Q9Y4F4 1720 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 ADGRA1Q86SQ6 560 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 NACAP1Q9BZK3 213 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 XIRP1Q702N8 1843 aaKnown RBP10.13□□□□□ -0.79
LINC00558-201ENST00000569422 ERICH2A1L162 156 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 BTBD18B2RXH4 712 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 CDKL5O76039 1030 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 SSRP1Q08945 709 aaKnown RBP10.13□□□□□ -0.79
LINC00558-201ENST00000569422 CHAF1AQ13111 956 aaPredicted RBP10.13□□□□□ -0.79
LINC00558-201ENST00000569422 TPD52L1Q16890 204 aaPredicted RBP10.13□□□□□ -0.79
LINC00558-201ENST00000569422 AKNAD1Q5T1N1 836 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 PTF1AQ7RTS3 328 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 BRAPQ7Z569 592 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 DHX40Q8IX18 779 aaKnown RBP10.13□□□□□ -0.79
LINC00558-201ENST00000569422 SGSM3Q96HU1 749 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 KIAA1468Q9P260 1216 aa10.13□□□□□ -0.79
LINC00558-201ENST00000569422 DYNLL1P63167 89 aaKnown RBP10.12□□□□□ -0.79
LINC00558-201ENST00000569422 WTAPQ15007 396 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 ATL3Q6DD88 541 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 TPM3P06753 285 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 LMOD1P29536 600 aaPredicted RBP10.12□□□□□ -0.79
LINC00558-201ENST00000569422 SYKP43405 635 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 PPP4R3CPQ6ZMV5 832 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 ZNF512BQ96KM6 892 aaPredicted RBP10.12□□□□□ -0.79
LINC00558-201ENST00000569422 FAM217BQ9NTX9 383 aaPredicted RBP10.12□□□□□ -0.79
LINC00558-201ENST00000569422 POLR3EQ9NVU0 708 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 TFCP2L1Q9NZI6 479 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 MROH7-TTC4A0A0A0MT08 1334 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 UBR2Q8IWV8 1755 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 NTSR2O95665 410 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 ANKRD18AQ8IVF6 992 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 PDILTQ8N807 584 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 TMEM87BQ96K49 555 aa10.12□□□□□ -0.79
LINC00558-201ENST00000569422 YEATS4O95619 227 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 EVX2Q03828 476 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 NR5A1Q13285 461 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 PNOCQ13519 176 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 FBXL16Q8N461 479 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 UBAC1Q9BSL1 405 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 NAT10Q9H0A0 1025 aaKnown RBP10.11□□□□□ -0.79
LINC00558-201ENST00000569422 SPATA31A1Q5TZJ5 1347 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 RIOK3O14730 519 aaKnown RBP10.11□□□□□ -0.79
LINC00558-201ENST00000569422 SART3Q15020 963 aaKnown RBP10.11□□□□□ -0.79
LINC00558-201ENST00000569422 RTN1Q16799 776 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 PARP10Q53GL7 1025 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 AXDND1Q5T1B0 1012 aaPredicted RBP10.11□□□□□ -0.79
LINC00558-201ENST00000569422 MYRIPQ8NFW9 859 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 CELF1Q92879 486 aaKnown RBP10.11□□□□□ -0.79
LINC00558-201ENST00000569422 SPTLC3Q9NUV7 552 aa10.11□□□□□ -0.79
LINC00558-201ENST00000569422 KLRK1P26718 216 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 TERF1P54274 439 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SLC39A14Q15043 492 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 NTRK3Q16288 839 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 CDC5LQ99459 802 aaKnown RBP10.1□□□□□ -0.79
LINC00558-201ENST00000569422 IFNKQ9P0W0 207 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SRP68Q9UHB9 627 aaKnown RBP10.1□□□□□ -0.79
LINC00558-201ENST00000569422 MAGEB6P1A0A0J9YX57 407 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 A0A1W2PQ27 194 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 A0A1W2PQ64 194 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 A0A1W2PQD8 194 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 DYNC1I1O14576 645 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SKILP12757 684 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 TNNT1P13805 278 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 GRIN1Q05586 938 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 PPARAQ07869 468 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SHC4Q6S5L8 630 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 DIS3L2Q8IYB7 885 aaKnown RBP10.1□□□□□ -0.79
LINC00558-201ENST00000569422 C8orf37Q96NL8 207 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.1□□□□□ -0.79
LINC00558-201ENST00000569422 KRT23Q9C075 422 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 ABCC12Q96J65 1359 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 DISP2A7MBM2 1401 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 USP27XA6NNY8 438 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 FOXN1O15353 648 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SAFBQ15424 915 aaKnown RBP eCLIP10.1□□□□□ -0.79
LINC00558-201ENST00000569422 TMC6Q7Z403 805 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SLC51AQ86UW1 340 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 LRRC8AQ8IWT6 810 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 TRIM22Q8IYM9 498 aa10.1□□□□□ -0.79
LINC00558-201ENST00000569422 SHANK3Q9BYB0 1731 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms