RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 FOXD4L6Q3SYB3 417 aaPredicted RBP8.59□□□□□ -1.03
UBR1-208ENST00000569066 FOXD4L3Q6VB84 417 aaPredicted RBP8.59□□□□□ -1.03
UBR1-208ENST00000569066 DDX54Q8TDD1 881 aaKnown RBP8.59□□□□□ -1.03
UBR1-208ENST00000569066 DEAF1O75398 565 aaPredicted RBP8.59□□□□□ -1.03
UBR1-208ENST00000569066 PPP2R5EQ16537 467 aa8.59□□□□□ -1.03
UBR1-208ENST00000569066 CRBNQ96SW2 442 aa8.59□□□□□ -1.03
UBR1-208ENST00000569066 KANSL2Q9H9L4 492 aa8.59□□□□□ -1.03
UBR1-208ENST00000569066 LOC100289279A0A1B0GTE1 492 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 B2RBV5 119 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 HTR3BO95264 441 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 NID1P14543 1247 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 SDE2Q6IQ49 451 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 BTBD6Q96KE9 485 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 DEPDC7Q96QD5 511 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 EHMT1Q9H9B1 1298 aa8.58□□□□□ -1.04
UBR1-208ENST00000569066 PRAMEF27A3QJZ7 478 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 AMPD1P23109 780 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 LARP1BQ659C4 914 aaKnown RBP8.57□□□□□ -1.04
UBR1-208ENST00000569066 FAM117BQ6P1L5 589 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 C12orf40Q86WS4 652 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 R3HCC1Q9Y3T6 440 aaKnown RBP8.57□□□□□ -1.04
UBR1-208ENST00000569066 FAM86C2PA6NEL3 165 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 U2SURPO15042 1029 aaKnown RBP8.57□□□□□ -1.04
UBR1-208ENST00000569066 OIP5O43482 229 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 TCEAL1Q15170 157 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 NFE2L2Q16236 605 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 WHAMMQ8TF30 809 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 MRFAP1L1Q96HT8 127 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 ACTR10Q9NZ32 417 aa8.57□□□□□ -1.04
UBR1-208ENST00000569066 ARL4DP49703 201 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 UBASH3BQ8TF42 649 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 ZYXQ15942 572 aaKnown RBP8.56□□□□□ -1.04
UBR1-208ENST00000569066 DDR2Q16832 855 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 ZNF787Q6DD87 383 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 PUS7Q96PZ0 661 aaKnown RBP8.56□□□□□ -1.04
UBR1-208ENST00000569066 SIRPGQ9P1W8 387 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 MAPK8IP1Q9UQF2 711 aa8.56□□□□□ -1.04
UBR1-208ENST00000569066 ATE1O95260 518 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 HOXB4P17483 251 aaPredicted RBP8.55□□□□□ -1.04
UBR1-208ENST00000569066 LYPD4Q6UWN0 246 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 CACTIN-AS1Q8N1I8 211 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 WNT8BQ93098 351 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 WDR18Q9BV38 432 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 OSGEPQ9NPF4 335 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 REV1Q9UBZ9 1251 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 TNNI3KQ59H18 835 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 IRF7Q92985 503 aa8.55□□□□□ -1.04
UBR1-208ENST00000569066 WISP1O95388 367 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 ACRP10323 421 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 OVOS1Q6IE37 1185 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 ILDR2Q71H61 639 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 ELMO3Q96BJ8 720 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.54□□□□□ -1.04
UBR1-208ENST00000569066 MSRB2Q9Y3D2 182 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 PCDHGC5Q9Y5F6 944 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 DGKGP49619 791 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 RBBP8NLQ8NC74 664 aaPredicted RBP8.54□□□□□ -1.04
UBR1-208ENST00000569066 KRT82Q9NSB4 513 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 KLHL3Q9UH77 587 aa8.54□□□□□ -1.04
UBR1-208ENST00000569066 PRR36Q9H6K5 1346 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 SLURP2P0DP57 97 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 SUZ12Q15022 739 aaKnown RBP8.53□□□□□ -1.04
UBR1-208ENST00000569066 PPM1JQ5JR12 505 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 EGFLAMQ63HQ2 1017 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 C6orf15Q6UXA7 325 aaPredicted RBP8.53□□□□□ -1.04
UBR1-208ENST00000569066 TTC6Q86TZ1 520 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 KLHL23Q8NBE8 558 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 RNPC3Q96LT9 517 aaKnown RBP8.53□□□□□ -1.04
UBR1-208ENST00000569066 DNAJC7Q99615 494 aa8.53□□□□□ -1.04
UBR1-208ENST00000569066 DLL1O00548 723 aa8.52□□□□□ -1.04
UBR1-208ENST00000569066 GJB6O95452 261 aa8.52□□□□□ -1.04
UBR1-208ENST00000569066 CELA2BP08218 269 aaPredicted RBP8.52□□□□□ -1.04
UBR1-208ENST00000569066 BCRP11274 1271 aa8.52□□□□□ -1.04
UBR1-208ENST00000569066 PLCG1P19174 1290 aa8.52□□□□□ -1.04
UBR1-208ENST00000569066 CD68P34810 354 aaPredicted RBP8.52□□□□□ -1.04
UBR1-208ENST00000569066 SLC16A10Q8TF71 515 aa8.52□□□□□ -1.04
UBR1-208ENST00000569066 A0A1W2PQH9 124 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 ANKRD62A6NC57 917 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 POLR2BP30876 1174 aaKnown RBP8.52□□□□□ -1.05
UBR1-208ENST00000569066 KIF4BQ2VIQ3 1234 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 ZC3H12AQ5D1E8 599 aaKnown RBP8.52□□□□□ -1.05
UBR1-208ENST00000569066 MRM1Q6IN84 353 aaKnown RBP8.52□□□□□ -1.05
UBR1-208ENST00000569066 HDXQ7Z353 690 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 PCDHB10Q9UN67 800 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 HIF3AQ9Y2N7 669 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 SBNO2Q9Y2G9 1366 aa8.52□□□□□ -1.05
UBR1-208ENST00000569066 AOC2O75106 756 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 IMPDH2P12268 514 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 GRK4P32298 578 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 GMPRP36959 345 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 SCARA3Q6AZY7 606 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 CYFIP1Q7L576 1253 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 LILRB2Q8N423 598 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 TMEM40Q8WWA1 233 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 MKL1Q969V6 931 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 PRDM6Q9NQX0 595 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 PPP1R9AQ9ULJ8 1098 aa8.51□□□□□ -1.05
UBR1-208ENST00000569066 MEIS3P2A8K0S8 358 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 UPK3BL1B0FP48 263 aa8.5□□□□□ -1.05
UBR1-208ENST00000569066 UPK3BL2E5RIL1 263 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms