RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 GTF3C6Q969F1 213 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 MRIQ9BWK5 157 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 TOMM22Q9NS69 142 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 DAGLAQ9Y4D2 1042 aa22.39■■□□□ 1.17
CLN3-233ENST00000568452 NT5C2P49902 561 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 NFKBIBQ15653 356 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 CYB5R4Q7L1T6 521 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 TEX11Q8IYF3 940 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 ESR2Q92731 530 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 TEKT1Q969V4 418 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 MCM9Q9NXL9 1143 aa22.38■■□□□ 1.17
CLN3-233ENST00000568452 MKRN1Q9UHC7 482 aaKnown RBP22.38■■□□□ 1.17
CLN3-233ENST00000568452 ANGEL1Q9UNK9 670 aaKnown RBP22.38■■□□□ 1.17
CLN3-233ENST00000568452 F8W031 263 aaPredicted RBP22.37■■□□□ 1.17
CLN3-233ENST00000568452 KDM4AO75164 1064 aa22.37■■□□□ 1.17
CLN3-233ENST00000568452 FGRP09769 529 aa22.37■■□□□ 1.17
CLN3-233ENST00000568452 HDLBPQ00341 1268 aaKnown RBP22.37■■□□□ 1.17
CLN3-233ENST00000568452 ST3GAL1Q11201 340 aa22.37■■□□□ 1.17
CLN3-233ENST00000568452 STK3Q13188 491 aa22.37■■□□□ 1.17
CLN3-233ENST00000568452 SART3Q15020 963 aaKnown RBP22.37■■□□□ 1.17
CLN3-233ENST00000568452 BAZ2AQ9UIF9 1905 aaKnown RBP22.37■■□□□ 1.17
CLN3-233ENST00000568452 SH2B2O14492 632 aaPredicted RBP22.36■■□□□ 1.17
CLN3-233ENST00000568452 PDIA4P13667 645 aaKnown RBP22.36■■□□□ 1.17
CLN3-233ENST00000568452 RRP12Q5JTH9 1297 aaKnown RBP22.36■■□□□ 1.17
CLN3-233ENST00000568452 LARGE2Q8N3Y3 721 aa22.36■■□□□ 1.17
CLN3-233ENST00000568452 TGFBRAP1Q8WUH2 860 aa22.36■■□□□ 1.17
CLN3-233ENST00000568452 ZSWIM5Q9P217 1185 aa22.36■■□□□ 1.17
CLN3-233ENST00000568452 TACC3Q9Y6A5 838 aa22.36■■□□□ 1.17
CLN3-233ENST00000568452 LAMB1P07942 1786 aa22.36■■□□□ 1.17
CLN3-233ENST00000568452 RHBDL3P58872 404 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 TNPO1Q92973 898 aaKnown RBP22.35■■□□□ 1.17
CLN3-233ENST00000568452 LLPHQ9BRT6 129 aaKnown RBP22.35■■□□□ 1.17
CLN3-233ENST00000568452 MXD3Q9BW11 206 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 KCNQ5Q9NR82 932 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 GJB2P29033 226 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 PDIA3P30101 505 aaKnown RBP22.35■■□□□ 1.17
CLN3-233ENST00000568452 PDE4BQ07343 736 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 C12orf60Q5U649 245 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 INCENPQ9NQS7 918 aa22.35■■□□□ 1.17
CLN3-233ENST00000568452 NAP1L2Q9ULW6 460 aaPredicted RBP22.35■■□□□ 1.17
CLN3-233ENST00000568452 MYO3BQ8WXR4 1341 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 BRCA1P38398 1863 aaKnown RBP22.34■■□□□ 1.17
CLN3-233ENST00000568452 CYP2D7A0A087X1C5 515 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 KLF18A0A0U1RQI7 1052 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 ERICH2A1L162 156 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 IFIT3O14879 490 aaKnown RBP22.34■■□□□ 1.17
CLN3-233ENST00000568452 ORC4O43929 436 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 LIFRP42702 1097 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 TMEM67Q5HYA8 995 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 IGDCC4Q8TDY8 1250 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 GBP4Q96PP9 640 aa22.34■■□□□ 1.17
CLN3-233ENST00000568452 ZNF277Q9NRM2 450 aaPredicted RBP22.34■■□□□ 1.17
CLN3-233ENST00000568452 SCN9AQ15858 1988 aa22.33■■□□□ 1.17
CLN3-233ENST00000568452 USP17L8P0C7I0 530 aa22.33■■□□□ 1.17
CLN3-233ENST00000568452 IARSP41252 1262 aaKnown RBP22.33■■□□□ 1.17
CLN3-233ENST00000568452 SCRN1Q12765 414 aa22.33■■□□□ 1.17
CLN3-233ENST00000568452 TMTC2Q8N394 836 aa22.33■■□□□ 1.17
CLN3-233ENST00000568452 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLN3-233ENST00000568452 NAV1Q8NEY1 1877 aa22.33■■□□□ 1.16
CLN3-233ENST00000568452 YDJCA8MPS7 323 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 DHX16O60231 1041 aaKnown RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 POLR3DP05423 398 aaPredicted RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 PDCP20941 246 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 CRKP46108 304 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 SCNN1DP51172 638 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 SGMS1Q86VZ5 419 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 MAPKAPK5Q8IW41 473 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 NIM1KQ8IY84 436 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 STK11IPQ8N1F8 1099 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 ZDHHC15Q96MV8 337 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 FHDC1Q9C0D6 1143 aaPredicted RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 TAOK3Q9H2K8 898 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 GPHNQ9NQX3 736 aaPredicted RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 ROBO3Q96MS0 1386 aa22.32■■□□□ 1.16
CLN3-233ENST00000568452 WDR33Q9C0J8 1336 aaKnown RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 ZNF646O15015 1829 aaPredicted RBP22.32■■□□□ 1.16
CLN3-233ENST00000568452 BRD1O95696 1058 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 NBR1Q14596 966 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 KIAA0825Q8IV33 1275 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 UBAC1Q9BSL1 405 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 ANP32EQ9BTT0 268 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 LY9Q9HBG7 655 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 SERPINA10Q9UK55 444 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 BRPF3Q9ULD4 1205 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 FLT1P17948 1338 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 GOLGA8BA8MQT2 603 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 CYP2D6P10635 497 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 NFXL1Q6ZNB6 911 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 CLEC17AQ6ZS10 378 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 NKX2-3Q8TAU0 364 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 ZNF287Q9HBT7 754 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 KIF3AQ9Y496 699 aa22.31■■□□□ 1.16
CLN3-233ENST00000568452 PSME4Q14997 1843 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 CCDC69A6NI79 296 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 HMGN5P82970 282 aaKnown RBP22.3■■□□□ 1.16
CLN3-233ENST00000568452 PKP1Q13835 747 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 WTAPQ15007 396 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 SYNE3Q6ZMZ3 975 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 IQCA1Q86XH1 822 aa22.3■■□□□ 1.16
CLN3-233ENST00000568452 NLGN2Q8NFZ4 835 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms