RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 TRIM17Q9Y577 477 aa27.61■■■□□ 2.01
CLN3-232ENST00000568443 PICALMQ13492 652 aa27.6■■■□□ 2.01
CLN3-232ENST00000568443 ZNF384Q8TF68 577 aa27.6■■■□□ 2.01
CLN3-232ENST00000568443 DBNDD2Q9BQY9 259 aa27.6■■■□□ 2.01
CLN3-232ENST00000568443 SOX10P56693 466 aa27.59■■■□□ 2.01
CLN3-232ENST00000568443 SNRKQ9NRH2 765 aa27.59■■■□□ 2.01
CLN3-232ENST00000568443 CEP85Q6P2H3 762 aa27.58■■■□□ 2.01
CLN3-232ENST00000568443 OTOP1Q7RTM1 612 aa27.58■■■□□ 2.01
CLN3-232ENST00000568443 CD99L2Q8TCZ2 262 aa27.58■■■□□ 2.01
CLN3-232ENST00000568443 DDX4Q9NQI0 724 aaKnown RBP27.58■■■□□ 2.01
CLN3-232ENST00000568443 MAP4K4O95819 1239 aaPredicted RBP27.57■■■□□ 2
CLN3-232ENST00000568443 RHBDL3P58872 404 aa27.57■■■□□ 2
CLN3-232ENST00000568443 NOL9Q5SY16 702 aaKnown RBP27.57■■■□□ 2
CLN3-232ENST00000568443 SH3BP5LQ7L8J4 393 aa27.57■■■□□ 2
CLN3-232ENST00000568443 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.57■■■□□ 2
CLN3-232ENST00000568443 ZCCHC17Q9NP64 241 aaKnown RBP27.57■■■□□ 2
CLN3-232ENST00000568443 RFX7Q2KHR2 1363 aa27.57■■■□□ 2
CLN3-232ENST00000568443 DDTLA6NHG4 134 aaPredicted RBP27.56■■■□□ 2
CLN3-232ENST00000568443 BTBD19C9JJ37 291 aa27.56■■■□□ 2
CLN3-232ENST00000568443 ZNF512BQ96KM6 892 aaPredicted RBP27.55■■■□□ 2
CLN3-232ENST00000568443 NOL10Q9BSC4 688 aaKnown RBP27.55■■■□□ 2
CLN3-232ENST00000568443 EFCC1Q9HA90 598 aa27.55■■■□□ 2
CLN3-232ENST00000568443 PHF20L1A8MW92 1017 aa27.54■■■□□ 2
CLN3-232ENST00000568443 NPM3O75607 178 aaKnown RBP27.54■■■□□ 2
CLN3-232ENST00000568443 MAP3K10Q02779 954 aa27.54■■■□□ 2
CLN3-232ENST00000568443 ATRNL1Q5VV63 1379 aa27.54■■■□□ 2
CLN3-232ENST00000568443 CCDC8Q9H0W5 538 aaPredicted RBP27.54■■■□□ 2
CLN3-232ENST00000568443 PICK1Q9NRD5 415 aa27.54■■■□□ 2
CLN3-232ENST00000568443 KCNH4Q9UQ05 1017 aa27.54■■■□□ 2
CLN3-232ENST00000568443 DOCK2Q92608 1830 aa27.53■■■□□ 2
CLN3-232ENST00000568443 ARHGEF6Q15052 776 aa27.53■■■□□ 2
CLN3-232ENST00000568443 NAA16Q6N069 864 aaPredicted RBP27.53■■■□□ 2
CLN3-232ENST00000568443 ERC1Q8IUD2 1116 aa27.53■■■□□ 2
CLN3-232ENST00000568443 EAF2Q96CJ1 260 aaPredicted RBP27.53■■■□□ 2
CLN3-232ENST00000568443 DBNLQ9UJU6 430 aaKnown RBP27.53■■■□□ 2
CLN3-232ENST00000568443 SCYL3Q8IZE3 742 aa27.52■■■□□ 2
CLN3-232ENST00000568443 EXOC6BQ9Y2D4 811 aa27.52■■■□□ 2
CLN3-232ENST00000568443 PTPN22Q9Y2R2 807 aa27.52■■■□□ 2
CLN3-232ENST00000568443 TLR2O60603 784 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 BAG3O95817 575 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 CYP2E1P05181 493 aaPredicted RBP27.51■■□□□ 1.99
CLN3-232ENST00000568443 TEX11Q8IYF3 940 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 TLR7Q9NYK1 1049 aaKnown RBP27.51■■□□□ 1.99
CLN3-232ENST00000568443 RCAN3Q9UKA8 241 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 DDX19BQ9UMR2 479 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 ZHX2Q9Y6X8 837 aa27.51■■□□□ 1.99
CLN3-232ENST00000568443 CXCL11O14625 94 aa27.5■■□□□ 1.99
CLN3-232ENST00000568443 CTNND1O60716 968 aaKnown RBP27.5■■□□□ 1.99
CLN3-232ENST00000568443 ZAP70P43403 619 aa27.5■■□□□ 1.99
CLN3-232ENST00000568443 HSP90AB4PQ58FF6 505 aa27.5■■□□□ 1.99
CLN3-232ENST00000568443 ANKRD23Q86SG2 305 aa27.5■■□□□ 1.99
CLN3-232ENST00000568443 COG6Q9Y2V7 657 aa27.5■■□□□ 1.99
CLN3-232ENST00000568443 SLURP2P0DP57 97 aa27.49■■□□□ 1.99
CLN3-232ENST00000568443 PTPRAP18433 802 aa27.49■■□□□ 1.99
CLN3-232ENST00000568443 PDHXO00330 501 aa27.48■■□□□ 1.99
CLN3-232ENST00000568443 TBC1D12O60347 775 aa27.48■■□□□ 1.99
CLN3-232ENST00000568443 IGSF3O75054 1194 aa27.48■■□□□ 1.99
CLN3-232ENST00000568443 PLCG2P16885 1265 aa27.48■■□□□ 1.99
CLN3-232ENST00000568443 RPAP2Q8IXW5 612 aaPredicted RBP27.48■■□□□ 1.99
CLN3-232ENST00000568443 SH3RF3Q8TEJ3 882 aaPredicted RBP27.48■■□□□ 1.99
CLN3-232ENST00000568443 OSBPL5Q9H0X9 879 aaPredicted RBP27.48■■□□□ 1.99
CLN3-232ENST00000568443 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.48■■□□□ 1.99
CLN3-232ENST00000568443 AATFQ9NY61 560 aaKnown RBP eCLIP27.48■■□□□ 1.99
CLN3-232ENST00000568443 CAP1Q01518 475 aa27.47■■□□□ 1.99
CLN3-232ENST00000568443 KIF22Q14807 665 aa27.47■■□□□ 1.99
CLN3-232ENST00000568443 AACSQ86V21 672 aa27.47■■□□□ 1.99
CLN3-232ENST00000568443 CHMP4BQ9H444 224 aaKnown RBP27.47■■□□□ 1.99
CLN3-232ENST00000568443 PPP4CP60510 307 aa27.46■■□□□ 1.99
CLN3-232ENST00000568443 MOGSQ13724 837 aa27.46■■□□□ 1.99
CLN3-232ENST00000568443 PIH1D3Q9NQM4 214 aaKnown RBP27.46■■□□□ 1.99
CLN3-232ENST00000568443 ZBTB40Q9NUA8 1239 aa27.46■■□□□ 1.99
CLN3-232ENST00000568443 HMMRO75330 724 aa27.45■■□□□ 1.98
CLN3-232ENST00000568443 FASTKD5Q7L8L6 764 aaKnown RBP27.45■■□□□ 1.98
CLN3-232ENST00000568443 AFG3L2Q9Y4W6 797 aa27.45■■□□□ 1.98
CLN3-232ENST00000568443 FAM196BA6NMK8 535 aa27.44■■□□□ 1.98
CLN3-232ENST00000568443 RHPN1Q8TCX5 695 aa27.44■■□□□ 1.98
CLN3-232ENST00000568443 IL1RAPL2Q9NP60 686 aa27.44■■□□□ 1.98
CLN3-232ENST00000568443 COL2A1P02458 1487 aaPredicted RBP27.44■■□□□ 1.98
CLN3-232ENST00000568443 HTTP42858 3142 aa27.43■■□□□ 1.98
CLN3-232ENST00000568443 A0A0G2JLL6 359 aaPredicted RBP27.43■■□□□ 1.98
CLN3-232ENST00000568443 IDH1O75874 414 aaKnown RBP27.43■■□□□ 1.98
CLN3-232ENST00000568443 LACTBP83111 547 aaPredicted RBP27.43■■□□□ 1.98
CLN3-232ENST00000568443 C17orf99Q6UX52 265 aa27.43■■□□□ 1.98
CLN3-232ENST00000568443 PRRT2Q7Z6L0 340 aaPredicted RBP27.43■■□□□ 1.98
CLN3-232ENST00000568443 ADGRA1Q86SQ6 560 aa27.43■■□□□ 1.98
CLN3-232ENST00000568443 TGFBRAP1Q8WUH2 860 aa27.43■■□□□ 1.98
CLN3-232ENST00000568443 CPA4Q9UI42 421 aa27.43■■□□□ 1.98
CLN3-232ENST00000568443 MYO5AQ9Y4I1 1855 aaKnown RBP27.42■■□□□ 1.98
CLN3-232ENST00000568443 TNRC18O15417 2968 aaPredicted RBP27.42■■□□□ 1.98
CLN3-232ENST00000568443 CYP7A1P22680 504 aa27.42■■□□□ 1.98
CLN3-232ENST00000568443 GPAT2Q6NUI2 795 aa27.42■■□□□ 1.98
CLN3-232ENST00000568443 DHX36Q9H2U1 1008 aaKnown RBP27.42■■□□□ 1.98
CLN3-232ENST00000568443 PI4KBQ9UBF8 816 aa27.42■■□□□ 1.98
CLN3-232ENST00000568443 MAST2Q6P0Q8 1798 aa27.41■■□□□ 1.98
CLN3-232ENST00000568443 APBB1O00213 710 aa27.41■■□□□ 1.98
CLN3-232ENST00000568443 GADL1Q6ZQY3 521 aa27.41■■□□□ 1.98
CLN3-232ENST00000568443 MAPKAPK5Q8IW41 473 aa27.41■■□□□ 1.98
CLN3-232ENST00000568443 CLASRPQ8N2M8 674 aaKnown RBP27.41■■□□□ 1.98
CLN3-232ENST00000568443 KIF1BPQ96EK5 621 aa27.41■■□□□ 1.98
CLN3-232ENST00000568443 PARK7Q99497 189 aaKnown RBP27.41■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms