RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 BTDP43251 543 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 GSTO1P78417 241 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 G3BP1Q13283 466 aaKnown RBP eCLIP20.8■□□□□ 0.92
CLN3-231ENST00000568422 GORABQ5T7V8 394 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 SCYL3Q8IZE3 742 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 PICK1Q9NRD5 415 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 ZSWIM8A7E2V4 1837 aa20.8■□□□□ 0.92
CLN3-231ENST00000568422 DOCK1Q14185 1865 aa20.79■□□□□ 0.92
CLN3-231ENST00000568422 GPR75-ASB3A0A0A6YYF3 556 aa20.79■□□□□ 0.92
CLN3-231ENST00000568422 NPM3O75607 178 aaKnown RBP20.79■□□□□ 0.92
CLN3-231ENST00000568422 LDHCP07864 332 aa20.79■□□□□ 0.92
CLN3-231ENST00000568422 MECOMQ03112 1051 aa20.79■□□□□ 0.92
CLN3-231ENST00000568422 SPATA5Q8NB90 893 aa20.79■□□□□ 0.92
CLN3-231ENST00000568422 HOXD10P28358 340 aa20.78■□□□□ 0.92
CLN3-231ENST00000568422 MOGSQ13724 837 aa20.78■□□□□ 0.92
CLN3-231ENST00000568422 SH3BP5LQ7L8J4 393 aa20.78■□□□□ 0.92
CLN3-231ENST00000568422 FASTKD5Q7L8L6 764 aaKnown RBP20.78■□□□□ 0.92
CLN3-231ENST00000568422 PARK7Q99497 189 aaKnown RBP20.78■□□□□ 0.92
CLN3-231ENST00000568422 ARHGAP39Q9C0H5 1083 aa20.78■□□□□ 0.92
CLN3-231ENST00000568422 HMG20BQ9P0W2 317 aa20.78■□□□□ 0.92
CLN3-231ENST00000568422 PTPRFP10586 1907 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 PHIPQ8WWQ0 1821 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 PNMA6EA0A0J9YXQ4 647 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 CTNND1O60716 968 aaKnown RBP20.77■□□□□ 0.92
CLN3-231ENST00000568422 UQCRFS1P1P0C7P4 283 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 EN2P19622 333 aaPredicted RBP20.77■□□□□ 0.92
CLN3-231ENST00000568422 ARID4AP29374 1257 aaPredicted RBP20.77■□□□□ 0.92
CLN3-231ENST00000568422 ZKSCAN2Q63HK3 967 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 CLUAP1Q96AJ1 413 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 GCC1Q96CN9 775 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 CPA4Q9UI42 421 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 ZHX2Q9Y6X8 837 aa20.77■□□□□ 0.92
CLN3-231ENST00000568422 ADGRA2Q96PE1 1338 aa20.77■□□□□ 0.91
CLN3-231ENST00000568422 MGAMO43451 1857 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 DDTLA6NHG4 134 aaPredicted RBP20.76■□□□□ 0.91
CLN3-231ENST00000568422 TBC1D12O60347 775 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 PTPRAP18433 802 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 PSMC4P43686 418 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 RHBDL3P58872 404 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 PICALMQ13492 652 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 DDX4Q9NQI0 724 aaKnown RBP20.76■□□□□ 0.91
CLN3-231ENST00000568422 SLC45A1Q9Y2W3 748 aa20.76■□□□□ 0.91
CLN3-231ENST00000568422 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.76■□□□□ 0.91
CLN3-231ENST00000568422 A0A0G2JLL6 359 aaPredicted RBP20.75■□□□□ 0.91
CLN3-231ENST00000568422 SLC4A8Q2Y0W8 1093 aa20.75■□□□□ 0.91
CLN3-231ENST00000568422 GPAT2Q6NUI2 795 aa20.75■□□□□ 0.91
CLN3-231ENST00000568422 PRRT2Q7Z6L0 340 aaPredicted RBP20.75■□□□□ 0.91
CLN3-231ENST00000568422 ZNF384Q8TF68 577 aa20.75■□□□□ 0.91
CLN3-231ENST00000568422 NSUN4Q96CB9 384 aaKnown RBP20.75■□□□□ 0.91
CLN3-231ENST00000568422 GPR108Q9NPR9 543 aa20.75■□□□□ 0.91
CLN3-231ENST00000568422 AFG3L2Q9Y4W6 797 aa20.75■□□□□ 0.91
CLN3-231ENST00000568422 COL2A1P02458 1487 aaPredicted RBP20.75■□□□□ 0.91
CLN3-231ENST00000568422 TMEM57Q8N5G2 664 aa20.74■□□□□ 0.91
CLN3-231ENST00000568422 TRIM47Q96LD4 638 aa20.74■□□□□ 0.91
CLN3-231ENST00000568422 SRRDQ9UH36 339 aa20.74■□□□□ 0.91
CLN3-231ENST00000568422 TNNQ9UQP3 1299 aa20.74■□□□□ 0.91
CLN3-231ENST00000568422 FMNL1O95466 1100 aaPredicted RBP20.73■□□□□ 0.91
CLN3-231ENST00000568422 SH3TC2Q8TF17 1288 aa20.73■□□□□ 0.91
CLN3-231ENST00000568422 RAI14Q9P0K7 980 aa20.73■□□□□ 0.91
CLN3-231ENST00000568422 PCDH10Q9P2E7 1040 aa20.73■□□□□ 0.91
CLN3-231ENST00000568422 IGSF3O75054 1194 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 BCRP11274 1271 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 CTGFP29279 349 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 MCAMP43121 646 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 POLA2Q14181 598 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 PI16Q6UXB8 463 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 TBC1D9Q6ZT07 1266 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 SSH3Q8TE77 659 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 LRP2BPQ9P2M1 347 aa20.72■□□□□ 0.91
CLN3-231ENST00000568422 ATAD5Q96QE3 1844 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 OSBPP22059 807 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 FCGRTP55899 365 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 ATP8B2P98198 1209 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 CCDC158Q5M9N0 1113 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 RAET1EQ8TD07 263 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 NOL10Q9BSC4 688 aaKnown RBP20.71■□□□□ 0.91
CLN3-231ENST00000568422 TBC1D2Q9BYX2 928 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 OSBPL5Q9H0X9 879 aaPredicted RBP20.71■□□□□ 0.91
CLN3-231ENST00000568422 MAST2Q6P0Q8 1798 aa20.71■□□□□ 0.91
CLN3-231ENST00000568422 CYP2C8P10632 490 aa20.7■□□□□ 0.9
CLN3-231ENST00000568422 OS9Q13438 667 aaPredicted RBP20.7■□□□□ 0.9
CLN3-231ENST00000568422 GADL1Q6ZQY3 521 aa20.7■□□□□ 0.9
CLN3-231ENST00000568422 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-231ENST00000568422 MYPNQ86TC9 1320 aa20.7■□□□□ 0.9
CLN3-231ENST00000568422 PLCG2P16885 1265 aa20.69■□□□□ 0.9
CLN3-231ENST00000568422 GRK4P32298 578 aa20.69■□□□□ 0.9
CLN3-231ENST00000568422 TNNI3KQ59H18 835 aa20.69■□□□□ 0.9
CLN3-231ENST00000568422 TTC39AQ5SRH9 613 aa20.69■□□□□ 0.9
CLN3-231ENST00000568422 FTSJ3Q8IY81 847 aaKnown RBP20.69■□□□□ 0.9
CLN3-231ENST00000568422 FPGT-TNNI3KV9GXZ4 949 aa20.69■□□□□ 0.9
CLN3-231ENST00000568422 TRIM75PA6NK02 468 aa20.68■□□□□ 0.9
CLN3-231ENST00000568422 BAG3O95817 575 aa20.68■□□□□ 0.9
CLN3-231ENST00000568422 HNRNPUQ00839 825 aaKnown RBP eCLIP20.68■□□□□ 0.9
CLN3-231ENST00000568422 TEX11Q8IYF3 940 aa20.68■□□□□ 0.9
CLN3-231ENST00000568422 PROCA1Q8NCQ7 364 aaPredicted RBP20.68■□□□□ 0.9
CLN3-231ENST00000568422 ZNF512BQ96KM6 892 aaPredicted RBP20.68■□□□□ 0.9
CLN3-231ENST00000568422 DHX36Q9H2U1 1008 aaKnown RBP20.68■□□□□ 0.9
CLN3-231ENST00000568422 HERC5Q9UII4 1024 aaKnown RBP20.68■□□□□ 0.9
CLN3-231ENST00000568422 AGTPBP1Q9UPW5 1226 aa20.68■□□□□ 0.9
CLN3-231ENST00000568422 FOCADQ5VW36 1801 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms