RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 TRMT44Q8IYL2 757 aaKnown RBP11.47□□□□□ -0.57
VPS9D1-205ENST00000565452 OTOFQ9HC10 1997 aa11.47□□□□□ -0.57
VPS9D1-205ENST00000565452 ECM29Q5VYK3 1845 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 RPAP1Q9BWH6 1393 aaPredicted RBP11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 FOXO4P98177 505 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 LMBR1LQ6UX01 489 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 SCYL3Q8IZE3 742 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 LINS1Q8NG48 757 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 ZNF594Q96JF6 807 aaPredicted RBP11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 IQSEC3Q9UPP2 1182 aaPredicted RBP11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 AGTPBP1Q9UPW5 1226 aa11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 LRRFIP2Q9Y608 721 aaKnown RBP11.46□□□□□ -0.57
VPS9D1-205ENST00000565452 SLC4A2P04920 1241 aa11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 XRCC5P13010 732 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 PRKAR2AP13861 404 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 PABPC4Q13310 644 aaKnown RBP eCLIP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 SHHQ15465 462 aa11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 MAP3K21Q5TCX8 1036 aa11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 ATXN2LQ8WWM7 1075 aaKnown RBP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 SENP6Q9GZR1 1112 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 TTYH1Q9H313 450 aaPredicted RBP11.45□□□□□ -0.58
VPS9D1-205ENST00000565452 TRIM75PA6NK02 468 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 PHF20L1A8MW92 1017 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 CTNND1O60716 968 aaKnown RBP11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 CYP2B6P20813 491 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 WDR43Q15061 677 aaKnown RBP eCLIP11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 LHX8Q68G74 356 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 DNAAF4Q8WXU2 420 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 NUDT12Q9BQG2 462 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 ARIH1Q9Y4X5 557 aaPredicted RBP11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 PRUNE2Q8WUY3 3088 aa11.44□□□□□ -0.58
VPS9D1-205ENST00000565452 CACNB2Q08289 660 aaPredicted RBP11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 CDC42EP5Q6NZY7 148 aa11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 G2E3Q7L622 706 aa11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 TRIB2Q92519 343 aa11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 C1QTNF1Q9BXJ1 281 aa11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 USP40Q9NVE5 1235 aa11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 LAMA2P24043 3122 aaKnown RBP11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 COL2A1P02458 1487 aaPredicted RBP11.43□□□□□ -0.58
VPS9D1-205ENST00000565452 RALBP1Q15311 655 aa11.42□□□□□ -0.58
VPS9D1-205ENST00000565452 TSPYL6Q8N831 410 aa11.42□□□□□ -0.58
VPS9D1-205ENST00000565452 PROCA1Q8NCQ7 364 aaPredicted RBP11.42□□□□□ -0.58
VPS9D1-205ENST00000565452 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
VPS9D1-205ENST00000565452 MROH5Q6ZUA9 1318 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 ZKSCAN1P17029 563 aaPredicted RBP11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 MAP3K10Q02779 954 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 NFIAQ12857 509 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 FKBP5Q13451 457 aaPredicted RBP11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 PDE3AQ14432 1141 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 C9orf50Q5SZB4 431 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 TREML2Q5T2D2 321 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 ZSCAN29Q8IWY8 852 aaPredicted RBP11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 CCAR1Q8IX12 1150 aaKnown RBP11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 IL27Q8NEV9 243 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 WDR66Q8TBY9 1149 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 SOCS4Q8WXH5 440 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 ASB2Q96Q27 587 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 FAM198AQ9UFP1 575 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 ADAMTS8Q9UP79 889 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 ALPK3Q96L96 1907 aa11.41□□□□□ -0.58
VPS9D1-205ENST00000565452 CCND3P30281 292 aaPredicted RBP11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 ATN1P54259 1190 aaPredicted RBP11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 MRPS5P82675 430 aaKnown RBP11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 FLIIQ13045 1269 aa11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 ZFPM1Q8IX07 1006 aa11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 ADAMTS19Q8TE59 1207 aa11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 UHRF1Q96T88 793 aaPredicted RBP11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 PUS3Q9BZE2 481 aaKnown RBP11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 MORF4L1Q9UBU8 362 aa11.4□□□□□ -0.58
VPS9D1-205ENST00000565452 SYNGAP1Q96PV0 1343 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 EYSQ5T1H1 3165 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 ENTPD3O75355 529 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 RTP1P59025 263 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 SPP2Q13103 211 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 DDX10Q13206 875 aaKnown RBP11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 GRIN2CQ14957 1233 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 EPHA10Q5JZY3 1008 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 GPRC5AQ8NFJ5 357 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 TBC1D2Q9BYX2 928 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 ASCC2Q9H1I8 757 aaPredicted RBP11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 DAGLAQ9Y4D2 1042 aa11.39□□□□□ -0.59
VPS9D1-205ENST00000565452 ARAP2Q8WZ64 1704 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 MUC3AQ02505 3323 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 SPEF2Q9C093 1822 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 MSCO60682 206 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 MAPK4P31152 587 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 RGS2P41220 211 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 METTL24Q5JXM2 366 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 MFSD14CQ5VZR4 134 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 USP38Q8NB14 1042 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 ZNF280CQ8ND82 737 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 PPM1EQ8WY54 764 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 BADQ92934 168 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 C9orf78Q9NZ63 289 aaPredicted RBP11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 ATP11BQ9Y2G3 1177 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 HCN4Q9Y3Q4 1203 aa11.38□□□□□ -0.59
VPS9D1-205ENST00000565452 MYH3P11055 1940 aa11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.37□□□□□ -0.59
VPS9D1-205ENST00000565452 DNM1LO00429 736 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms