RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, human

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-215	ENST00000565236	TRIM17	Q9Y577	477 aa		27.61	■■■□□ 2.01
CLN3-215	ENST00000565236	PICALM	Q13492	652 aa		27.6	■■■□□ 2.01
CLN3-215	ENST00000565236	ZNF384	Q8TF68	577 aa		27.6	■■■□□ 2.01
CLN3-215	ENST00000565236	DBNDD2	Q9BQY9	259 aa		27.6	■■■□□ 2.01
CLN3-215	ENST00000565236	SOX10	P56693	466 aa		27.59	■■■□□ 2.01
CLN3-215	ENST00000565236	SNRK	Q9NRH2	765 aa		27.59	■■■□□ 2.01
CLN3-215	ENST00000565236	CEP85	Q6P2H3	762 aa		27.58	■■■□□ 2.01
CLN3-215	ENST00000565236	OTOP1	Q7RTM1	612 aa		27.58	■■■□□ 2.01
CLN3-215	ENST00000565236	CD99L2	Q8TCZ2	262 aa		27.58	■■■□□ 2.01
CLN3-215	ENST00000565236	DDX4	Q9NQI0	724 aa	Known RBP	27.58	■■■□□ 2.01
CLN3-215	ENST00000565236	MAP4K4	O95819	1239 aa	Predicted RBP	27.57	■■■□□ 2
CLN3-215	ENST00000565236	RHBDL3	P58872	404 aa		27.57	■■■□□ 2
CLN3-215	ENST00000565236	NOL9	Q5SY16	702 aa	Known RBP	27.57	■■■□□ 2
CLN3-215	ENST00000565236	SH3BP5L	Q7L8J4	393 aa		27.57	■■■□□ 2
CLN3-215	ENST00000565236	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	27.57	■■■□□ 2
CLN3-215	ENST00000565236	ZCCHC17	Q9NP64	241 aa	Known RBP	27.57	■■■□□ 2
CLN3-215	ENST00000565236	RFX7	Q2KHR2	1363 aa		27.57	■■■□□ 2
CLN3-215	ENST00000565236	DDTL	A6NHG4	134 aa	Predicted RBP	27.56	■■■□□ 2
CLN3-215	ENST00000565236	BTBD19	C9JJ37	291 aa		27.56	■■■□□ 2
CLN3-215	ENST00000565236	ZNF512B	Q96KM6	892 aa	Predicted RBP	27.55	■■■□□ 2
CLN3-215	ENST00000565236	NOL10	Q9BSC4	688 aa	Known RBP	27.55	■■■□□ 2
CLN3-215	ENST00000565236	EFCC1	Q9HA90	598 aa		27.55	■■■□□ 2
CLN3-215	ENST00000565236	PHF20L1	A8MW92	1017 aa		27.54	■■■□□ 2
CLN3-215	ENST00000565236	NPM3	O75607	178 aa	Known RBP	27.54	■■■□□ 2
CLN3-215	ENST00000565236	MAP3K10	Q02779	954 aa		27.54	■■■□□ 2
CLN3-215	ENST00000565236	ATRNL1	Q5VV63	1379 aa		27.54	■■■□□ 2
CLN3-215	ENST00000565236	CCDC8	Q9H0W5	538 aa	Predicted RBP	27.54	■■■□□ 2
CLN3-215	ENST00000565236	PICK1	Q9NRD5	415 aa		27.54	■■■□□ 2
CLN3-215	ENST00000565236	KCNH4	Q9UQ05	1017 aa		27.54	■■■□□ 2
CLN3-215	ENST00000565236	DOCK2	Q92608	1830 aa		27.53	■■■□□ 2
CLN3-215	ENST00000565236	ARHGEF6	Q15052	776 aa		27.53	■■■□□ 2
CLN3-215	ENST00000565236	NAA16	Q6N069	864 aa	Predicted RBP	27.53	■■■□□ 2
CLN3-215	ENST00000565236	ERC1	Q8IUD2	1116 aa		27.53	■■■□□ 2
CLN3-215	ENST00000565236	EAF2	Q96CJ1	260 aa	Predicted RBP	27.53	■■■□□ 2
CLN3-215	ENST00000565236	DBNL	Q9UJU6	430 aa	Known RBP	27.53	■■■□□ 2
CLN3-215	ENST00000565236	SCYL3	Q8IZE3	742 aa		27.52	■■■□□ 2
CLN3-215	ENST00000565236	EXOC6B	Q9Y2D4	811 aa		27.52	■■■□□ 2
CLN3-215	ENST00000565236	PTPN22	Q9Y2R2	807 aa		27.52	■■■□□ 2
CLN3-215	ENST00000565236	TLR2	O60603	784 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	BAG3	O95817	575 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	CYP2E1	P05181	493 aa	Predicted RBP	27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	TEX11	Q8IYF3	940 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	TLR7	Q9NYK1	1049 aa	Known RBP	27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	RCAN3	Q9UKA8	241 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	DDX19B	Q9UMR2	479 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	ZHX2	Q9Y6X8	837 aa		27.51	■■□□□ 1.99
CLN3-215	ENST00000565236	CXCL11	O14625	94 aa		27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	CTNND1	O60716	968 aa	Known RBP	27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	ZAP70	P43403	619 aa		27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	HSP90AB4P	Q58FF6	505 aa		27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	ANKRD23	Q86SG2	305 aa		27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	COG6	Q9Y2V7	657 aa		27.5	■■□□□ 1.99
CLN3-215	ENST00000565236	SLURP2	P0DP57	97 aa		27.49	■■□□□ 1.99
CLN3-215	ENST00000565236	PTPRA	P18433	802 aa		27.49	■■□□□ 1.99
CLN3-215	ENST00000565236	PDHX	O00330	501 aa		27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	TBC1D12	O60347	775 aa		27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	IGSF3	O75054	1194 aa		27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	PLCG2	P16885	1265 aa		27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	RPAP2	Q8IXW5	612 aa	Predicted RBP	27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	OSBPL5	Q9H0X9	879 aa	Predicted RBP	27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	AATF	Q9NY61	560 aa	Known RBP eCLIP	27.48	■■□□□ 1.99
CLN3-215	ENST00000565236	CAP1	Q01518	475 aa		27.47	■■□□□ 1.99
CLN3-215	ENST00000565236	KIF22	Q14807	665 aa		27.47	■■□□□ 1.99
CLN3-215	ENST00000565236	AACS	Q86V21	672 aa		27.47	■■□□□ 1.99
CLN3-215	ENST00000565236	CHMP4B	Q9H444	224 aa	Known RBP	27.47	■■□□□ 1.99
CLN3-215	ENST00000565236	PPP4C	P60510	307 aa		27.46	■■□□□ 1.99
CLN3-215	ENST00000565236	MOGS	Q13724	837 aa		27.46	■■□□□ 1.99
CLN3-215	ENST00000565236	PIH1D3	Q9NQM4	214 aa	Known RBP	27.46	■■□□□ 1.99
CLN3-215	ENST00000565236	ZBTB40	Q9NUA8	1239 aa		27.46	■■□□□ 1.99
CLN3-215	ENST00000565236	HMMR	O75330	724 aa		27.45	■■□□□ 1.98
CLN3-215	ENST00000565236	FASTKD5	Q7L8L6	764 aa	Known RBP	27.45	■■□□□ 1.98
CLN3-215	ENST00000565236	AFG3L2	Q9Y4W6	797 aa		27.45	■■□□□ 1.98
CLN3-215	ENST00000565236	FAM196B	A6NMK8	535 aa		27.44	■■□□□ 1.98
CLN3-215	ENST00000565236	RHPN1	Q8TCX5	695 aa		27.44	■■□□□ 1.98
CLN3-215	ENST00000565236	IL1RAPL2	Q9NP60	686 aa		27.44	■■□□□ 1.98
CLN3-215	ENST00000565236	COL2A1	P02458	1487 aa	Predicted RBP	27.44	■■□□□ 1.98
CLN3-215	ENST00000565236	HTT	P42858	3142 aa		27.43	■■□□□ 1.98
CLN3-215	ENST00000565236		A0A0G2JLL6	359 aa	Predicted RBP	27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	IDH1	O75874	414 aa	Known RBP	27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	LACTB	P83111	547 aa	Predicted RBP	27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	C17orf99	Q6UX52	265 aa		27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	PRRT2	Q7Z6L0	340 aa	Predicted RBP	27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	ADGRA1	Q86SQ6	560 aa		27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	TGFBRAP1	Q8WUH2	860 aa		27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	CPA4	Q9UI42	421 aa		27.43	■■□□□ 1.98
CLN3-215	ENST00000565236	MYO5A	Q9Y4I1	1855 aa	Known RBP	27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	TNRC18	O15417	2968 aa	Predicted RBP	27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	CYP7A1	P22680	504 aa		27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	GPAT2	Q6NUI2	795 aa		27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	DHX36	Q9H2U1	1008 aa	Known RBP	27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	PI4KB	Q9UBF8	816 aa		27.42	■■□□□ 1.98
CLN3-215	ENST00000565236	MAST2	Q6P0Q8	1798 aa		27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	APBB1	O00213	710 aa		27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	GADL1	Q6ZQY3	521 aa		27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	MAPKAPK5	Q8IW41	473 aa		27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	CLASRP	Q8N2M8	674 aa	Known RBP	27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	KIF1BP	Q96EK5	621 aa		27.41	■■□□□ 1.98
CLN3-215	ENST00000565236	PARK7	Q99497	189 aa	Known RBP	27.41	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms