RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 GINM1Q9NU53 330 aa7.3□□□□□ -1.24
LINC00560-201ENST00000564593 ADAM11O75078 769 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 CILPO75339 1184 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 CTSBP07858 339 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 GTF2F1P35269 517 aaKnown RBP eCLIP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 NASPP49321 788 aaPredicted RBP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 HNRNPUQ00839 825 aaKnown RBP eCLIP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 MPP2Q14168 576 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 CWF19L2Q2TBE0 894 aaKnown RBP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 FBXO11Q86XK2 927 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 MCF2L2Q86YR7 1114 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 KRTAP9-9Q9BYP9 154 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 KRTAP9-4Q9BYQ2 154 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 KRT82Q9NSB4 513 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 KCNK4Q9NYG8 393 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 PCDHA4Q9UN74 947 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 LOC100289279A0A1B0GTE1 492 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 FGRP09769 529 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 COL9A2Q14055 689 aaPredicted RBP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 SLITRK4Q8IW52 837 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 FMR1NBQ8N0W7 255 aaPredicted RBP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 DHX38Q92620 1227 aaKnown RBP7.29□□□□□ -1.24
LINC00560-201ENST00000564593 LRRC3Q9BY71 257 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 CACNA2D2Q9NY47 1150 aa7.29□□□□□ -1.24
LINC00560-201ENST00000564593 SPDYE3A6NKU9 549 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 DYRK3O43781 588 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 LIG1P18858 919 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 MCM4P33991 863 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 TRIM28Q13263 835 aaKnown RBP7.28□□□□□ -1.24
LINC00560-201ENST00000564593 HP1BP3Q5SSJ5 553 aaPredicted RBP7.28□□□□□ -1.24
LINC00560-201ENST00000564593 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.28□□□□□ -1.24
LINC00560-201ENST00000564593 REC114Q7Z4M0 266 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 TPSG1Q9NRR2 321 aa7.28□□□□□ -1.24
LINC00560-201ENST00000564593 DLL1O00548 723 aa7.27□□□□□ -1.25
LINC00560-201ENST00000564593 ZNF862O60290 1169 aa7.27□□□□□ -1.25
LINC00560-201ENST00000564593 SSBP05455 408 aaKnown RBP eCLIP7.27□□□□□ -1.25
LINC00560-201ENST00000564593 SOX9P48436 509 aa7.27□□□□□ -1.25
LINC00560-201ENST00000564593 RPL6Q02878 288 aaKnown RBP7.27□□□□□ -1.25
LINC00560-201ENST00000564593 DUOXA2Q1HG44 320 aa7.27□□□□□ -1.25
LINC00560-201ENST00000564593 NBPF11Q86T75 865 aa7.27□□□□□ -1.25
LINC00560-201ENST00000564593 WDR89Q96FK6 387 aaPredicted RBP7.27□□□□□ -1.25
LINC00560-201ENST00000564593 DLGAP3O95886 979 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 UBASH3BQ8TF42 649 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 CPLX3Q8WVH0 158 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 ARMC5Q96C12 935 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 BRMS1Q9HCU9 246 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 RAD18Q9NS91 495 aa7.26□□□□□ -1.25
LINC00560-201ENST00000564593 FAM229AH3BQW9 127 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 SLFN14P0C7P3 912 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 CDK8P49336 464 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 ZNF165P49910 485 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 KIF4BQ2VIQ3 1234 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 EXOSC6Q5RKV6 272 aaKnown RBP7.25□□□□□ -1.25
LINC00560-201ENST00000564593 STRIP2Q9ULQ0 834 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 AOC2O75106 756 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 STK10O94804 968 aaKnown RBP7.25□□□□□ -1.25
LINC00560-201ENST00000564593 INPP5AQ14642 412 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 WIPI1Q5MNZ9 446 aaPredicted RBP7.25□□□□□ -1.25
LINC00560-201ENST00000564593 GK5Q6ZS86 529 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 HDXQ7Z353 690 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 KRTAP19-1Q8IUB9 90 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 ELMO3Q96BJ8 720 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 PLPPR2Q96GM1 343 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 DNAJC2Q99543 621 aaKnown RBP7.25□□□□□ -1.25
LINC00560-201ENST00000564593 RUSC1Q9BVN2 902 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 PPT2Q9UMR5 302 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 SNCAIPQ9Y6H5 919 aa7.25□□□□□ -1.25
LINC00560-201ENST00000564593 WISP1O95388 367 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 ELNP15502 786 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 SELPP16109 830 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 PRRT3Q5FWE3 981 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 LRFN4Q6PJG9 635 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 IGF2-ASQ6U949 168 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 CCDC81Q6ZN84 652 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 REXO1Q8N1G1 1221 aaKnown RBP7.24□□□□□ -1.25
LINC00560-201ENST00000564593 FERD3LQ96RJ6 166 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 WDR18Q9BV38 432 aa7.24□□□□□ -1.25
LINC00560-201ENST00000564593 DCDC2CA8MYV0 355 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 GFRA2O00451 464 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 GRIN3BO60391 1043 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 APBA3O96018 575 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 CLCQ05315 142 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 PRSS36Q5K4E3 855 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 FBXW10Q5XX13 1052 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 ACAD11Q709F0 780 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 HIRIP3Q9BW71 556 aaPredicted RBP7.23□□□□□ -1.25
LINC00560-201ENST00000564593 SRRTQ9BXP5 876 aaKnown RBP7.23□□□□□ -1.25
LINC00560-201ENST00000564593 MRPL18Q9H0U6 180 aaKnown RBP7.23□□□□□ -1.25
LINC00560-201ENST00000564593 POLR3KQ9Y2Y1 108 aaPredicted RBP7.23□□□□□ -1.25
LINC00560-201ENST00000564593 PCDHB14Q9Y5E9 798 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 MRVI1Q9Y6F6 885 aa7.23□□□□□ -1.25
LINC00560-201ENST00000564593 RBL2Q08999 1139 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 ZC3H12AQ5D1E8 599 aaKnown RBP7.22□□□□□ -1.25
LINC00560-201ENST00000564593 AKAP4Q5JQC9 854 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 NUTM2GQ5VZR2 741 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 KIAA1211Q6ZU35 1233 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 C12orf40Q86WS4 652 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 TMPRSS13Q9BYE2 586 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 RNF208Q9H0X6 261 aa7.22□□□□□ -1.25
LINC00560-201ENST00000564593 CSADQ9Y600 493 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms