RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ARHGAP45Q92619 1136 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 NEUROD6Q96NK8 337 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 PICK1Q9NRD5 415 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 SRRDQ9UH36 339 aa20.89■□□□□ 0.93
CLN3-211ENST00000564091 OSBPP22059 807 aa20.88■□□□□ 0.93
CLN3-211ENST00000564091 MTFR1Q15390 333 aa20.88■□□□□ 0.93
CLN3-211ENST00000564091 HABP4Q5JVS0 413 aaKnown RBP20.88■□□□□ 0.93
CLN3-211ENST00000564091 FAM163AQ96GL9 167 aaPredicted RBP20.88■□□□□ 0.93
CLN3-211ENST00000564091 PARK7Q99497 189 aaKnown RBP20.88■□□□□ 0.93
CLN3-211ENST00000564091 TNNQ9UQP3 1299 aa20.88■□□□□ 0.93
CLN3-211ENST00000564091 AKAP2Q9Y2D5 859 aa20.88■□□□□ 0.93
CLN3-211ENST00000564091 PTPRAP18433 802 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 HOXD10P28358 340 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 MECOMQ03112 1051 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 MTX1Q13505 466 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 MVPQ14764 893 aaKnown RBP20.87■□□□□ 0.93
CLN3-211ENST00000564091 SPTY2D1Q68D10 685 aaPredicted RBP20.87■□□□□ 0.93
CLN3-211ENST00000564091 SLF2Q8IX21 1173 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 ZNF384Q8TF68 577 aa20.87■□□□□ 0.93
CLN3-211ENST00000564091 RFX7Q2KHR2 1363 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 PDS5AQ29RF7 1337 aaKnown RBP20.86■□□□□ 0.93
CLN3-211ENST00000564091 BCRP11274 1271 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 MAP3K10Q02779 954 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 PI16Q6UXB8 463 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 TBC1D9Q6ZT07 1266 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 ERICH6Q7L0X2 663 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 RAET1EQ8TD07 263 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 HMG20BQ9P0W2 317 aa20.86■□□□□ 0.93
CLN3-211ENST00000564091 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.86■□□□□ 0.93
CLN3-211ENST00000564091 MROH7-TTC4A0A0A0MT08 1334 aa20.85■□□□□ 0.93
CLN3-211ENST00000564091 GPR75-ASB3A0A0A6YYF3 556 aa20.85■□□□□ 0.93
CLN3-211ENST00000564091 A0A0G2JLL6 359 aaPredicted RBP20.85■□□□□ 0.93
CLN3-211ENST00000564091 RHBDL3P58872 404 aa20.85■□□□□ 0.93
CLN3-211ENST00000564091 GADL1Q6ZQY3 521 aa20.85■□□□□ 0.93
CLN3-211ENST00000564091 PRRT2Q7Z6L0 340 aaPredicted RBP20.85■□□□□ 0.93
CLN3-211ENST00000564091 CCDC84Q86UT8 332 aaPredicted RBP20.85■□□□□ 0.93
CLN3-211ENST00000564091 AFG3L2Q9Y4W6 797 aa20.85■□□□□ 0.93
CLN3-211ENST00000564091 MYPNQ86TC9 1320 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 CCER2I3L3R5 266 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 BCAR3O75815 825 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 TRIM27P14373 513 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 GRK4P32298 578 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 PRKCZQ05513 592 aa20.84■□□□□ 0.93
CLN3-211ENST00000564091 FASTKD5Q7L8L6 764 aaKnown RBP20.84■□□□□ 0.93
CLN3-211ENST00000564091 FRAT1Q92837 279 aaPredicted RBP20.84■□□□□ 0.93
CLN3-211ENST00000564091 PNMA6EA0A0J9YXQ4 647 aa20.83■□□□□ 0.93
CLN3-211ENST00000564091 CTNND1O60716 968 aaKnown RBP20.83■□□□□ 0.93
CLN3-211ENST00000564091 GNAI2P04899 355 aa20.83■□□□□ 0.93
CLN3-211ENST00000564091 GORABQ5T7V8 394 aa20.83■□□□□ 0.93
CLN3-211ENST00000564091 SPATA5Q8NB90 893 aa20.83■□□□□ 0.93
CLN3-211ENST00000564091 CLUAP1Q96AJ1 413 aa20.83■□□□□ 0.93
CLN3-211ENST00000564091 TRIM75PA6NK02 468 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 FAM196BA6NMK8 535 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 IPO8O15397 1037 aaKnown RBP20.82■□□□□ 0.92
CLN3-211ENST00000564091 FCGRTP55899 365 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 ATF7IPQ6VMQ6 1270 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 NSUN4Q96CB9 384 aaKnown RBP20.82■□□□□ 0.92
CLN3-211ENST00000564091 SHISA4Q96DD7 197 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 GABRQQ9UN88 632 aa20.82■□□□□ 0.92
CLN3-211ENST00000564091 G3BP1Q13283 466 aaKnown RBP eCLIP20.81■□□□□ 0.92
CLN3-211ENST00000564091 RAI14Q9P0K7 980 aa20.81■□□□□ 0.92
CLN3-211ENST00000564091 BIN2Q9UBW5 565 aaPredicted RBP20.81■□□□□ 0.92
CLN3-211ENST00000564091 CCL5P13501 91 aa20.8■□□□□ 0.92
CLN3-211ENST00000564091 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.8■□□□□ 0.92
CLN3-211ENST00000564091 ZSWIM8A7E2V4 1837 aa20.8■□□□□ 0.92
CLN3-211ENST00000564091 H0YGN5 161 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 TBC1D12O60347 775 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 LDHCP07864 332 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 ARID4AP29374 1257 aaPredicted RBP20.79■□□□□ 0.92
CLN3-211ENST00000564091 MCAMP43121 646 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 GSTO1P78417 241 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 RNF208Q9H0X6 261 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 COLQQ9Y215 455 aaPredicted RBP20.79■□□□□ 0.92
CLN3-211ENST00000564091 SLC45A1Q9Y2W3 748 aa20.79■□□□□ 0.92
CLN3-211ENST00000564091 NPM3O75607 178 aaKnown RBP20.78■□□□□ 0.92
CLN3-211ENST00000564091 TREML2Q5T2D2 321 aa20.78■□□□□ 0.92
CLN3-211ENST00000564091 SMCR8Q8TEV9 937 aaPredicted RBP20.78■□□□□ 0.92
CLN3-211ENST00000564091 GJB1P08034 283 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 GJA8P48165 433 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 FLT3LGP49771 235 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 UBXN2AP68543 259 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 SPP2Q13103 211 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 RRP1BQ14684 758 aaKnown RBP20.77■□□□□ 0.92
CLN3-211ENST00000564091 TMEM57Q8N5G2 664 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 OSBPL5Q9H0X9 879 aaPredicted RBP20.77■□□□□ 0.92
CLN3-211ENST00000564091 SNRKQ9NRH2 765 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 LRP2BPQ9P2M1 347 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 AGTPBP1Q9UPW5 1226 aa20.77■□□□□ 0.92
CLN3-211ENST00000564091 UQCRFS1P1P0C7P4 283 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 TEX11Q8IYF3 940 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 ANKRD13CQ8N6S4 541 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 SLAIN1Q8ND83 568 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 NKX2-3Q8TAU0 364 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 DPF3Q92784 378 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 UNC93B1Q9H1C4 597 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 CEP290O15078 2479 aa20.76■□□□□ 0.91
CLN3-211ENST00000564091 RBBP6Q7Z6E9 1792 aaKnown RBP20.75■□□□□ 0.91
CLN3-211ENST00000564091 TNPO2O14787 897 aaKnown RBP20.75■□□□□ 0.91
CLN3-211ENST00000564091 ADCY3O60266 1144 aa20.75■□□□□ 0.91
CLN3-211ENST00000564091 MAP4K4O95819 1239 aaPredicted RBP20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms