RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 EXOC6BQ9Y2D4 811 aa17.27■□□□□ 0.36
SMPD3-204ENST00000563396 MAP3K10Q02779 954 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 HSP90AB4PQ58FF6 505 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 TBC1D9Q6ZT07 1266 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 SH3BP5LQ7L8J4 393 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 ZFPM1Q8IX07 1006 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 ZKSCAN4Q969J2 545 aaPredicted RBP17.26■□□□□ 0.35
SMPD3-204ENST00000563396 OTUD5Q96G74 571 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 PTPN18Q99952 460 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 R3HDMLQ9H3Y0 253 aa17.26■□□□□ 0.35
SMPD3-204ENST00000563396 CHMP4BQ9H444 224 aaKnown RBP17.26■□□□□ 0.35
SMPD3-204ENST00000563396 CYP2E1P05181 493 aaPredicted RBP17.25■□□□□ 0.35
SMPD3-204ENST00000563396 LDHCP07864 332 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 INPP5BP32019 993 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 GTF2A2P52657 109 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 PPIL2Q13356 520 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 SIRT2Q8IXJ6 389 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 BRI3BPQ8WY22 251 aa17.25■□□□□ 0.35
SMPD3-204ENST00000563396 PPATQ06203 517 aa17.24■□□□□ 0.35
SMPD3-204ENST00000563396 OTUD7BQ6GQQ9 843 aa17.24■□□□□ 0.35
SMPD3-204ENST00000563396 MIGA2Q7L4E1 593 aa17.24■□□□□ 0.35
SMPD3-204ENST00000563396 ZCCHC17Q9NP64 241 aaKnown RBP17.24■□□□□ 0.35
SMPD3-204ENST00000563396 RAI14Q9P0K7 980 aa17.24■□□□□ 0.35
SMPD3-204ENST00000563396 LOC285556D6RIA3 1793 aa17.24■□□□□ 0.35
SMPD3-204ENST00000563396 CCL15-CCL14A0A0B4J2E2 113 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 FKTNO75072 461 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 HMMRO75330 724 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 CRHR2Q13324 411 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 CCL15Q16663 113 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 C20orf194Q5TEA3 1177 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.23■□□□□ 0.35
SMPD3-204ENST00000563396 RHPN1Q8TCX5 695 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 CCDC8Q9H0W5 538 aaPredicted RBP17.23■□□□□ 0.35
SMPD3-204ENST00000563396 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.23■□□□□ 0.35
SMPD3-204ENST00000563396 LRP2BPQ9P2M1 347 aa17.23■□□□□ 0.35
SMPD3-204ENST00000563396 MYH7P12883 1935 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 DDTLA6NHG4 134 aaPredicted RBP17.22■□□□□ 0.35
SMPD3-204ENST00000563396 PHF20L1A8MW92 1017 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 IRF6O14896 467 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 ZAP70P43403 619 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 PKN2Q16513 984 aaKnown RBP17.22■□□□□ 0.35
SMPD3-204ENST00000563396 KIF1BPQ96EK5 621 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 SNRKQ9NRH2 765 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 KCNH4Q9UQ05 1017 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 RBBP6Q7Z6E9 1792 aaKnown RBP17.22■□□□□ 0.35
SMPD3-204ENST00000563396 NAV1Q8NEY1 1877 aa17.22■□□□□ 0.35
SMPD3-204ENST00000563396 CETPP11597 493 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 PPP4CP60510 307 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 SNAPC2Q13487 334 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 PICALMQ13492 652 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 NAA16Q6N069 864 aaPredicted RBP17.21■□□□□ 0.35
SMPD3-204ENST00000563396 TMED8Q6PL24 325 aaPredicted RBP17.21■□□□□ 0.35
SMPD3-204ENST00000563396 ADGRA1Q86SQ6 560 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 AACSQ86V21 672 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 FAM43AQ8N2R8 423 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 OSBPL5Q9H0X9 879 aaPredicted RBP17.21■□□□□ 0.35
SMPD3-204ENST00000563396 PIH1D3Q9NQM4 214 aaKnown RBP17.21■□□□□ 0.35
SMPD3-204ENST00000563396 MYH1P12882 1939 aa17.21■□□□□ 0.35
SMPD3-204ENST00000563396 ZSWIM8A7E2V4 1837 aa17.2■□□□□ 0.34
SMPD3-204ENST00000563396 TBC1D12O60347 775 aa17.2■□□□□ 0.34
SMPD3-204ENST00000563396 PLCG2P16885 1265 aa17.2■□□□□ 0.34
SMPD3-204ENST00000563396 SCYL3Q8IZE3 742 aa17.2■□□□□ 0.34
SMPD3-204ENST00000563396 RAB11FIP3O75154 756 aa17.19■□□□□ 0.34
SMPD3-204ENST00000563396 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.19■□□□□ 0.34
SMPD3-204ENST00000563396 IL1RAPL2Q9NP60 686 aa17.19■□□□□ 0.34
SMPD3-204ENST00000563396 BAG3O95817 575 aa17.18■□□□□ 0.34
SMPD3-204ENST00000563396 MOGSQ13724 837 aa17.18■□□□□ 0.34
SMPD3-204ENST00000563396 TAF1CQ15572 869 aaPredicted RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 FBXO46Q6PJ61 603 aaPredicted RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 ZSCAN29Q8IWY8 852 aaPredicted RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 TEX11Q8IYF3 940 aa17.18■□□□□ 0.34
SMPD3-204ENST00000563396 CLASRPQ8N2M8 674 aaKnown RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 SH3RF3Q8TEJ3 882 aaPredicted RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 NOL10Q9BSC4 688 aaKnown RBP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 AATFQ9NY61 560 aaKnown RBP eCLIP17.18■□□□□ 0.34
SMPD3-204ENST00000563396 FLT1P17948 1338 aa17.18■□□□□ 0.34
SMPD3-204ENST00000563396 CCDC85CA6NKD9 419 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 BTBD19C9JJ37 291 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 CTNND1O60716 968 aaKnown RBP17.17■□□□□ 0.34
SMPD3-204ENST00000563396 RGS19P49795 217 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 CERS3Q8IU89 383 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 ERO1AQ96HE7 468 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 HPS5Q9UPZ3 1129 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 ADGRA2Q96PE1 1338 aa17.17■□□□□ 0.34
SMPD3-204ENST00000563396 CXCL11O14625 94 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 SLURP2P0DP57 97 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 OTOP1Q7RTM1 612 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 ANKRD23Q86SG2 305 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 ANTXR1Q9H6X2 564 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 ZFYVE28Q9HCC9 887 aa17.16■□□□□ 0.34
SMPD3-204ENST00000563396 HERC5Q9UII4 1024 aaKnown RBP17.16■□□□□ 0.34
SMPD3-204ENST00000563396 A0A0G2JLL6 359 aaPredicted RBP17.15■□□□□ 0.34
SMPD3-204ENST00000563396 TLR2O60603 784 aa17.15■□□□□ 0.34
SMPD3-204ENST00000563396 IDH1O75874 414 aaKnown RBP17.15■□□□□ 0.34
SMPD3-204ENST00000563396 PTPRAP18433 802 aa17.15■□□□□ 0.34
SMPD3-204ENST00000563396 SP3Q02447 781 aa17.15■□□□□ 0.34
SMPD3-204ENST00000563396 PRRT2Q7Z6L0 340 aaPredicted RBP17.15■□□□□ 0.34
SMPD3-204ENST00000563396 METTL16Q86W50 562 aaKnown RBP17.15■□□□□ 0.34
SMPD3-204ENST00000563396 DHX36Q9H2U1 1008 aaKnown RBP17.15■□□□□ 0.34
SMPD3-204ENST00000563396 PICK1Q9NRD5 415 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms