RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CALM3P0DP25 149 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 CCDC178Q5BJE1 867 aa10.67□□□□□ -0.7
VPS39-205ENST00000562258 TRIM75PA6NK02 468 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 EPS15P42566 896 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 ZNF589Q86UQ0 364 aaPredicted RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 ANGEL1Q9UNK9 670 aaKnown RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 MAP2P11137 1827 aaKnown RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 PTPDC1A2A3K4 754 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 HOOK2Q96ED9 719 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 SERPINB13Q9UIV8 391 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 RAD50Q92878 1312 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 STX6O43752 255 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 CFBP00751 764 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 CYP2E1P05181 493 aaPredicted RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 UBA7P41226 1012 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 ATP6V0A2Q9Y487 856 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 ARHGEF28Q8N1W1 1705 aaKnown RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 CDHR2Q9BYE9 1310 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 TRAK2O60296 914 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 ICA1Q05084 483 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 SF3B3Q15393 1217 aaKnown RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 KLHL10Q6JEL2 608 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 FHDC1Q9C0D6 1143 aaPredicted RBP10.66□□□□□ -0.7
VPS39-205ENST00000562258 SNX14Q9Y5W7 946 aa10.66□□□□□ -0.7
VPS39-205ENST00000562258 FRMPD2Q68DX3 1309 aaPredicted RBP10.65□□□□□ -0.7
VPS39-205ENST00000562258 E7EWF7 191 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 SEMA3EO15041 775 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 CRKP46108 304 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 SUPT20HL1Q3ZLR7 823 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 WWC2Q6AWC2 1192 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 RUFY3Q7L099 469 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 GPR108Q9NPR9 543 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 MARCKSP29966 332 aaPredicted RBP10.65□□□□□ -0.7
VPS39-205ENST00000562258 POLA2Q14181 598 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 UBE3CQ15386 1083 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 ABCB5Q2M3G0 1257 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 PPP4R3BQ5MIZ7 849 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 KRT26Q7Z3Y9 468 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 CNOT7Q9UIV1 285 aaKnown RBP10.65□□□□□ -0.7
VPS39-205ENST00000562258 RIPOR2Q9Y4F9 1068 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 BCL9O00512 1426 aa10.65□□□□□ -0.7
VPS39-205ENST00000562258 MSNP26038 577 aaKnown RBP10.65□□□□□ -0.71
VPS39-205ENST00000562258 RBM25P49756 843 aaKnown RBP10.65□□□□□ -0.71
VPS39-205ENST00000562258 SAMD7Q7Z3H4 446 aa10.65□□□□□ -0.71
VPS39-205ENST00000562258 CRAMP1Q96RY5 1269 aa10.65□□□□□ -0.71
VPS39-205ENST00000562258 KIAA1210Q9ULL0 1709 aa10.65□□□□□ -0.71
VPS39-205ENST00000562258 CHGBP05060 677 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 MYCLP12524 364 aaPredicted RBP10.64□□□□□ -0.71
VPS39-205ENST00000562258 JAKMIP3Q5VZ66 844 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 TNMDQ9H2S6 317 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 ARPP21Q9UBL0 812 aaPredicted RBP10.64□□□□□ -0.71
VPS39-205ENST00000562258 ZNRF3Q9ULT6 936 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 GRIN3BO60391 1043 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 FLOT1O75955 427 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 DDR1Q08345 913 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 TMEM266Q2M3C6 531 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 ISM2Q6H9L7 571 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 C3orf67Q6ZVT6 689 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 PDGFDQ9GZP0 370 aaPredicted RBP10.64□□□□□ -0.71
VPS39-205ENST00000562258 OFD1O75665 1012 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 KLRK1P26718 216 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 ADD2P35612 726 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 ANAPC15P60006 121 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 MICALL2Q8IY33 904 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 SLC44A5Q8NCS7 719 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 CEP89Q96ST8 783 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 EHMT1Q9H9B1 1298 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.64□□□□□ -0.71
VPS39-205ENST00000562258 KDM2BQ8NHM5 1336 aa10.64□□□□□ -0.71
VPS39-205ENST00000562258 BAG4O95429 457 aaKnown RBP10.63□□□□□ -0.71
VPS39-205ENST00000562258 ALAS1P13196 640 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 CEP57L1Q8IYX8 460 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 SLC10A4Q96EP9 437 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 INCENPQ9NQS7 918 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 TCP11L1Q9NUJ3 509 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 GINS2Q9Y248 185 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 CYP2D6P10635 497 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 ADD1P35611 737 aaKnown RBP10.63□□□□□ -0.71
VPS39-205ENST00000562258 FAM173BQ6P4H8 233 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 CERS3Q8IU89 383 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 SH3RF3Q8TEJ3 882 aaPredicted RBP10.63□□□□□ -0.71
VPS39-205ENST00000562258 RAB34Q9BZG1 259 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 GPBP1L1Q9HC44 474 aaPredicted RBP10.63□□□□□ -0.71
VPS39-205ENST00000562258 C6orf50Q9HD87 102 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 CEP131Q9UPN4 1083 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 TNS2Q63HR2 1409 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 M0R2C6 588 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 TPM1P09493 284 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 RASSF7Q02833 373 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 PNMA1Q8ND90 353 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 PLIN2Q99541 437 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 TNKSO95271 1327 aa10.63□□□□□ -0.71
VPS39-205ENST00000562258 ITSN1Q15811 1721 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 LETM2Q2VYF4 491 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 C9orf131Q5VYM1 1079 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 ATG9AQ7Z3C6 839 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 CCDC148Q8NFR7 591 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 ATP8A2Q9NTI2 1148 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 BIN1O00499 593 aa10.62□□□□□ -0.71
VPS39-205ENST00000562258 BACH1O14867 736 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms