RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TNPO1Q92973 898 aaKnown RBP25.09■■□□□ 1.61
CLN3-209ENST00000561689 KRT23Q9C075 422 aa25.09■■□□□ 1.61
CLN3-209ENST00000561689 RNF41Q9H4P4 317 aaPredicted RBP25.09■■□□□ 1.61
CLN3-209ENST00000561689 WDR19Q8NEZ3 1342 aa25.08■■□□□ 1.61
CLN3-209ENST00000561689 USP17L8P0C7I0 530 aa25.08■■□□□ 1.61
CLN3-209ENST00000561689 NUCB2P80303 420 aa25.08■■□□□ 1.61
CLN3-209ENST00000561689 SLC4A8Q2Y0W8 1093 aa25.08■■□□□ 1.61
CLN3-209ENST00000561689 MKRN1Q9UHC7 482 aaKnown RBP25.08■■□□□ 1.61
CLN3-209ENST00000561689 USP17L3A6NCW0 530 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 USP17L4A6NCW7 530 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 USP17L1Q7RTZ2 530 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 GTF3C6Q969F1 213 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 CD2APQ9Y5K6 639 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 YDJCA8MPS7 323 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 MAPKAPK5Q8IW41 473 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 TEX11Q8IYF3 940 aa25.07■■□□□ 1.6
CLN3-209ENST00000561689 ARPP21Q9UBL0 812 aaPredicted RBP25.07■■□□□ 1.6
CLN3-209ENST00000561689 RHBDL3P58872 404 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 SCRN1Q12765 414 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 SOGA3Q5TF21 947 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 CERS3Q8IU89 383 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 KIAA0825Q8IV33 1275 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 MYH2Q9UKX2 1941 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 TIAM2Q8IVF5 1701 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 KIAA1551Q9HCM1 1747 aa25.06■■□□□ 1.6
CLN3-209ENST00000561689 PFKFB2O60825 505 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 PLCG2P16885 1265 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 GJB2P29033 226 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 PDIA3P30101 505 aaKnown RBP25.05■■□□□ 1.6
CLN3-209ENST00000561689 LARGE2Q8N3Y3 721 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 BRPF3Q9ULD4 1205 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 ZDHHC9Q9Y397 364 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 PRDM1O75626 825 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 CCT2P78371 535 aaKnown RBP25.05■■□□□ 1.6
CLN3-209ENST00000561689 SBK1Q52WX2 424 aa25.05■■□□□ 1.6
CLN3-209ENST00000561689 ANGEL1Q9UNK9 670 aaKnown RBP25.05■■□□□ 1.6
CLN3-209ENST00000561689 BAZ2AQ9UIF9 1905 aaKnown RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 KLF18A0A0U1RQI7 1052 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 SH2B2O14492 632 aaPredicted RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 EVCP57679 992 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 ZNF274Q96GC6 653 aaPredicted RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 FKBP1AP62942 108 aaKnown RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 FOXD4L5Q5VV16 416 aaPredicted RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 IGDCC4Q8TDY8 1250 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 FOXD4L4Q8WXT5 416 aaPredicted RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 TMEM87BQ96K49 555 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 ZKSCAN3Q9BRR0 538 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 SENP2Q9HC62 589 aa25.04■■□□□ 1.6
CLN3-209ENST00000561689 SAP30BPQ9UHR5 308 aaKnown RBP25.04■■□□□ 1.6
CLN3-209ENST00000561689 TMEM67Q5HYA8 995 aa25.03■■□□□ 1.6
CLN3-209ENST00000561689 TEKT1Q969V4 418 aa25.03■■□□□ 1.6
CLN3-209ENST00000561689 NCOA5Q9HCD5 579 aaKnown RBP25.03■■□□□ 1.6
CLN3-209ENST00000561689 SCN9AQ15858 1988 aa25.03■■□□□ 1.6
CLN3-209ENST00000561689 IFIT3O14879 490 aaKnown RBP25.02■■□□□ 1.6
CLN3-209ENST00000561689 C12orf60Q5U649 245 aa25.02■■□□□ 1.6
CLN3-209ENST00000561689 RAB11FIP4Q86YS3 637 aa25.02■■□□□ 1.6
CLN3-209ENST00000561689 ESR2Q92731 530 aa25.02■■□□□ 1.6
CLN3-209ENST00000561689 BCS1LQ9Y276 419 aa25.02■■□□□ 1.6
CLN3-209ENST00000561689 HHIPL2Q6UWX4 724 aa25.02■■□□□ 1.6
CLN3-209ENST00000561689 FLT1P17948 1338 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 GOLGA8BA8MQT2 603 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 RANBP6O60518 1105 aaKnown RBP25.01■■□□□ 1.59
CLN3-209ENST00000561689 JAK2O60674 1132 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 SLC3A2P08195 630 aaKnown RBP25.01■■□□□ 1.59
CLN3-209ENST00000561689 FGRP09769 529 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 CRKP46108 304 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 LY9Q9HBG7 655 aa25.01■■□□□ 1.59
CLN3-209ENST00000561689 USP40Q9NVE5 1235 aa25■■□□□ 1.59
CLN3-209ENST00000561689 RAD17O75943 681 aa25■■□□□ 1.59
CLN3-209ENST00000561689 BRD1O95696 1058 aa25■■□□□ 1.59
CLN3-209ENST00000561689 POLR3DP05423 398 aaPredicted RBP25■■□□□ 1.59
CLN3-209ENST00000561689 PCP11498 1178 aaKnown RBP25■■□□□ 1.59
CLN3-209ENST00000561689 SYT1P21579 422 aa25■■□□□ 1.59
CLN3-209ENST00000561689 APOBEC3HQ6NTF7 200 aaKnown RBP25■■□□□ 1.59
CLN3-209ENST00000561689 AMOTL1Q8IY63 956 aa25■■□□□ 1.59
CLN3-209ENST00000561689 NLGN2Q8NFZ4 835 aa25■■□□□ 1.59
CLN3-209ENST00000561689 HPS5Q9UPZ3 1129 aa25■■□□□ 1.59
CLN3-209ENST00000561689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25■■□□□ 1.59
CLN3-209ENST00000561689 PCDHAC2Q9Y5I4 1007 aa25■■□□□ 1.59
CLN3-209ENST00000561689 COL4A5P29400 1685 aa24.99■■□□□ 1.59
CLN3-209ENST00000561689 PLCD1P51178 756 aa24.99■■□□□ 1.59
CLN3-209ENST00000561689 NFXL1Q6ZNB6 911 aa24.99■■□□□ 1.59
CLN3-209ENST00000561689 DYNLL2Q96FJ2 89 aa24.99■■□□□ 1.59
CLN3-209ENST00000561689 IARSP41252 1262 aaKnown RBP24.98■■□□□ 1.59
CLN3-209ENST00000561689 PICALMQ13492 652 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 SART3Q15020 963 aaKnown RBP24.98■■□□□ 1.59
CLN3-209ENST00000561689 UBAC1Q9BSL1 405 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 VPS33BQ9H267 617 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 TAOK3Q9H2K8 898 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 RBM5P52756 815 aaKnown RBP eCLIP24.98■■□□□ 1.59
CLN3-209ENST00000561689 PDE4BQ07343 736 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 CDC42EP5Q6NZY7 148 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 ZDHHC15Q96MV8 337 aa24.98■■□□□ 1.59
CLN3-209ENST00000561689 ORC4O43929 436 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 CTDNEP1O95476 244 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 MCM4P33991 863 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 LIFRP42702 1097 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 NIM1KQ8IY84 436 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 DDX11Q96FC9 970 aa24.97■■□□□ 1.59
CLN3-209ENST00000561689 ERICH2A1L162 156 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms