RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 TCEANC2Q96MN5 208 aa13.4□□□□□ -0.26
SNX1-212ENST00000560861 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.4□□□□□ -0.26
SNX1-212ENST00000560861 ROBO3Q96MS0 1386 aa13.4□□□□□ -0.26
SNX1-212ENST00000560861 NEDD4P46934 1319 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 LARGE1O95461 756 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 PLCG2P16885 1265 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 YY1P25490 414 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 EVX2Q03828 476 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 CTDSPL2Q05D32 466 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 ST3GAL1Q11201 340 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 AKNAD1Q5T1N1 836 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 APOBEC3HQ6NTF7 200 aaKnown RBP13.39□□□□□ -0.27
SNX1-212ENST00000560861 RSBN1LQ6PCB5 846 aaPredicted RBP13.39□□□□□ -0.27
SNX1-212ENST00000560861 ZDHHC15Q96MV8 337 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 LIMCH1Q9UPQ0 1083 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 SIPA1L1O43166 1804 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 MYO3BQ8WXR4 1341 aa13.39□□□□□ -0.27
SNX1-212ENST00000560861 CYP2D7A0A087X1C5 515 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 USP17L12C9JPN9 530 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 USP17L21D6R901 530 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 F8W031 263 aaPredicted RBP13.38□□□□□ -0.27
SNX1-212ENST00000560861 PSMD14O00487 310 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 CRKP46108 304 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 SCNN1DP51172 638 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 EVCP57679 992 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 RASSF7Q02833 373 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 NIM1KQ8IY84 436 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 NCOA7Q8NI08 942 aa13.38□□□□□ -0.27
SNX1-212ENST00000560861 ARPP21Q9UBL0 812 aaPredicted RBP13.38□□□□□ -0.27
SNX1-212ENST00000560861 DAXXQ9UER7 740 aaPredicted RBP13.38□□□□□ -0.27
SNX1-212ENST00000560861 WDHD1O75717 1129 aaPredicted RBP13.37□□□□□ -0.27
SNX1-212ENST00000560861 CYP2D6P10635 497 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 CXCL9Q07325 125 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 C12orf60Q5U649 245 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 CDC42EP5Q6NZY7 148 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 Q6ZUG5 572 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 CYB5R4Q7L1T6 521 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 KIAA0825Q8IV33 1275 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 TEX11Q8IYF3 940 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 TEKT1Q969V4 418 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 NOL10Q9BSC4 688 aaKnown RBP13.37□□□□□ -0.27
SNX1-212ENST00000560861 INCENPQ9NQS7 918 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 SERPINA10Q9UK55 444 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 TPCN1Q9ULQ1 816 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 PCDHAC2Q9Y5I4 1007 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 FLT1P17948 1338 aa13.37□□□□□ -0.27
SNX1-212ENST00000560861 PRC1O43663 620 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 ORC4O43929 436 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 RAD17O75943 681 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 PCP11498 1178 aaKnown RBP13.36□□□□□ -0.27
SNX1-212ENST00000560861 MCM5P33992 734 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 ANKRD1Q15327 319 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 ME3Q16798 604 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 NOL8Q76FK4 1167 aaKnown RBP13.36□□□□□ -0.27
SNX1-212ENST00000560861 MAPKAPK5Q8IW41 473 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 AGBL3Q8NEM8 1001 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 TGFBRAP1Q8WUH2 860 aa13.36□□□□□ -0.27
SNX1-212ENST00000560861 INTS4Q96HW7 963 aaKnown RBP13.36□□□□□ -0.27
SNX1-212ENST00000560861 ZSCAN31Q96LW9 406 aaPredicted RBP13.36□□□□□ -0.27
SNX1-212ENST00000560861 GPHNQ9NQX3 736 aaPredicted RBP13.36□□□□□ -0.27
SNX1-212ENST00000560861 MINDY4BA8MYZ0 360 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 B4E1Z4 1266 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 FZD9O00144 591 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 USP17L8P0C7I0 530 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 USP5P45974 858 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 MFSD6Q6ZSS7 791 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 RALYLQ86SE5 291 aaKnown RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 ZBED3Q96IU2 234 aaPredicted RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 LARP6Q9BRS8 491 aaKnown RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 MTA3Q9BTC8 594 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 LRRC2Q9BYS8 371 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 KRT23Q9C075 422 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 RNF41Q9H4P4 317 aaPredicted RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 CNNM2Q9H8M5 875 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 DDX4Q9NQI0 724 aaKnown RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 SH2B1Q9NRF2 756 aaPredicted RBP13.35□□□□□ -0.27
SNX1-212ENST00000560861 MCM9Q9NXL9 1143 aa13.35□□□□□ -0.27
SNX1-212ENST00000560861 SH2B2O14492 632 aaPredicted RBP13.34□□□□□ -0.27
SNX1-212ENST00000560861 CIAPIN1Q6FI81 312 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 CHST3Q7LGC8 479 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 SPRYD3Q8NCJ5 442 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 IGDCC4Q8TDY8 1250 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 BRF1Q92994 677 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 IDI2Q9BXS1 227 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 SLKQ9H2G2 1235 aaPredicted RBP13.34□□□□□ -0.27
SNX1-212ENST00000560861 USP40Q9NVE5 1235 aa13.34□□□□□ -0.27
SNX1-212ENST00000560861 COL2A1P02458 1487 aaPredicted RBP13.34□□□□□ -0.27
SNX1-212ENST00000560861 GREB1LQ9C091 1923 aaPredicted RBP13.33□□□□□ -0.28
SNX1-212ENST00000560861 KDM4AO75164 1064 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 TRDNQ13061 729 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 CFAP100Q494V2 611 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 MTMR14Q8NCE2 650 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 JDP2Q8WYK2 163 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 TMEM87BQ96K49 555 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 ZSWIM5Q9P217 1185 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 CIZ1Q9ULV3 898 aaPredicted RBP13.33□□□□□ -0.28
SNX1-212ENST00000560861 MYH8P13535 1937 aa13.33□□□□□ -0.28
SNX1-212ENST00000560861 PFKFB2O60825 505 aa13.32□□□□□ -0.28
SNX1-212ENST00000560861 YBX3P16989 372 aaKnown RBP eCLIP13.32□□□□□ -0.28
SNX1-212ENST00000560861 NT5C2P49902 561 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms