RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MAP3K10Q02779 954 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 MOGSQ13724 837 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 GPAT2Q6NUI2 795 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 ERICH6Q7L0X2 663 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 DPF3Q92784 378 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 AFG3L2Q9Y4W6 797 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 GAKO14976 1311 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 MYPNQ86TC9 1320 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 ADGRA2Q96PE1 1338 aa11.35□□□□□ -0.59
HDDC3-204ENST00000559834 RBBP6Q7Z6E9 1792 aaKnown RBP11.34□□□□□ -0.59
HDDC3-204ENST00000559834 A0A0G2JLL6 359 aaPredicted RBP11.34□□□□□ -0.59
HDDC3-204ENST00000559834 A0A1B0GUL7 405 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 IPO8O15397 1037 aaKnown RBP11.34□□□□□ -0.59
HDDC3-204ENST00000559834 SRGAP3O43295 1099 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 MAP4K4O95819 1239 aaPredicted RBP11.34□□□□□ -0.59
HDDC3-204ENST00000559834 GJB1P08034 283 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 CYP2C8P10632 490 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 BCRP11274 1271 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 CAPN2P17655 700 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 CTGFP29279 349 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 BTDP43251 543 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 GSTO1P78417 241 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 RASGRF1Q13972 1273 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 MTFR1Q15390 333 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 GORABQ5T7V8 394 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 GADL1Q6ZQY3 521 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 PRRT2Q7Z6L0 340 aaPredicted RBP11.34□□□□□ -0.59
HDDC3-204ENST00000559834 SLAIN1Q8ND83 568 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 XAGE2Q96GT9 111 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 NEUROD6Q96NK8 337 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 MEIS3Q99687 375 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 RNF208Q9H0X6 261 aa11.34□□□□□ -0.59
HDDC3-204ENST00000559834 GPR75-ASB3A0A0A6YYF3 556 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 TBC1D12O60347 775 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 NPM3O75607 178 aaKnown RBP11.33□□□□□ -0.6
HDDC3-204ENST00000559834 CCL5P13501 91 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 GJA8P48165 433 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 RARSP54136 660 aaKnown RBP11.33□□□□□ -0.6
HDDC3-204ENST00000559834 TFCP2Q12800 502 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 PICALMQ13492 652 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 SMCR8Q8TEV9 937 aaPredicted RBP11.33□□□□□ -0.6
HDDC3-204ENST00000559834 HTATIP2Q9BUP3 242 aa11.33□□□□□ -0.6
HDDC3-204ENST00000559834 COLQQ9Y215 455 aaPredicted RBP11.33□□□□□ -0.6
HDDC3-204ENST00000559834 DDTLA6NHG4 134 aaPredicted RBP11.32□□□□□ -0.6
HDDC3-204ENST00000559834 H0YGN5 161 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 MECOMQ03112 1051 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 PRKCZQ05513 592 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 G3BP1Q13283 466 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDDC3-204ENST00000559834 MTX1Q13505 466 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 SH3BP5LQ7L8J4 393 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDDC3-204ENST00000559834 PNMA3Q9UL41 463 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 MROH7-TTC4A0A0A0MT08 1334 aa11.32□□□□□ -0.6
HDDC3-204ENST00000559834 ATRNL1Q5VV63 1379 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 TRIM75PA6NK02 468 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 TNPO2O14787 897 aaKnown RBP11.31□□□□□ -0.6
HDDC3-204ENST00000559834 ADCY3O60266 1144 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 FXR1P51114 621 aaKnown RBP eCLIP11.31□□□□□ -0.6
HDDC3-204ENST00000559834 SPATA5Q8NB90 893 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 PXYLP1Q8TE99 480 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 COA7Q96BR5 231 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 NOL10Q9BSC4 688 aaKnown RBP11.31□□□□□ -0.6
HDDC3-204ENST00000559834 TBC1D2Q9BYX2 928 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 OSBPL5Q9H0X9 879 aaPredicted RBP11.31□□□□□ -0.6
HDDC3-204ENST00000559834 DDX4Q9NQI0 724 aaKnown RBP11.31□□□□□ -0.6
HDDC3-204ENST00000559834 RAI14Q9P0K7 980 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 AGTPBP1Q9UPW5 1226 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 NR2E3Q9Y5X4 410 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 MYH13Q9UKX3 1938 aa11.31□□□□□ -0.6
HDDC3-204ENST00000559834 SGPL1O95470 568 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 GNAI2P04899 355 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 UQCRFS1P1P0C7P4 283 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 FLT3LGP49771 235 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 RHBDL3P58872 404 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 PABPC4Q13310 644 aaKnown RBP eCLIP11.3□□□□□ -0.69e-6■■■■□ 24.7
HDDC3-204ENST00000559834 IRF5Q13568 498 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 PROCA1Q8NCQ7 364 aaPredicted RBP11.3□□□□□ -0.6
HDDC3-204ENST00000559834 U2AF1L4Q8WU68 220 aaKnown RBP11.3□□□□□ -0.6
HDDC3-204ENST00000559834 HMG20BQ9P0W2 317 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 LRP2BPQ9P2M1 347 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 GABRQQ9UN88 632 aa11.3□□□□□ -0.6
HDDC3-204ENST00000559834 MYH2Q9UKX2 1941 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 BAG3O95817 575 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 TFRCP02786 760 aaKnown RBP11.29□□□□□ -0.6
HDDC3-204ENST00000559834 GCLCP48506 637 aaPredicted RBP11.29□□□□□ -0.6
HDDC3-204ENST00000559834 SPP2Q13103 211 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 ANKRD13CQ8N6S4 541 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 ZNF280CQ8ND82 737 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 NSUN4Q96CB9 384 aaKnown RBP11.29□□□□□ -0.6
HDDC3-204ENST00000559834 SHISA4Q96DD7 197 aa11.29□□□□□ -0.6
HDDC3-204ENST00000559834 RFX7Q2KHR2 1363 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 USP17L5A8MUK1 530 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 CCER2I3L3R5 266 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 IGSF3O75054 1194 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 FARP2O94887 1054 aaPredicted RBP11.28□□□□□ -0.6
HDDC3-204ENST00000559834 PLCG2P16885 1265 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 ARID4AP29374 1257 aaPredicted RBP11.28□□□□□ -0.6
HDDC3-204ENST00000559834 CAP2P40123 477 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 FAM110CQ1W6H9 321 aa11.28□□□□□ -0.6
HDDC3-204ENST00000559834 ATF7IPQ6VMQ6 1270 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms