RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PRPF40AO75400 957 aaKnown RBP9.59□□□□□ -0.87
RTF1-204ENST00000558117 FGD1P98174 961 aa9.59□□□□□ -0.87
RTF1-204ENST00000558117 MEGF10Q96KG7 1140 aa9.59□□□□□ -0.87
RTF1-204ENST00000558117 DUSP9Q99956 384 aaKnown RBP9.59□□□□□ -0.87
RTF1-204ENST00000558117 RUSC1Q9BVN2 902 aa9.59□□□□□ -0.87
RTF1-204ENST00000558117 XRCC5P13010 732 aaKnown RBP9.58□□□□□ -0.88
RTF1-204ENST00000558117 AFAP1Q8N556 730 aa9.58□□□□□ -0.88
RTF1-204ENST00000558117 RNF208Q9H0X6 261 aa9.58□□□□□ -0.88
RTF1-204ENST00000558117 SPG7Q9UQ90 795 aa9.58□□□□□ -0.88
RTF1-204ENST00000558117 K7ELQ4 463 aaPredicted RBP9.57□□□□□ -0.88
RTF1-204ENST00000558117 B3GALT4O96024 378 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 YY1P25490 414 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 ZNF423Q2M1K9 1284 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 RPS26P11Q5JNZ5 115 aaPredicted RBP9.57□□□□□ -0.88
RTF1-204ENST00000558117 KIAA1211Q6ZU35 1233 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 SRCIN1Q9C0H9 1055 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 A2ML1A8K2U0 1454 aa9.57□□□□□ -0.88
RTF1-204ENST00000558117 LRP6O75581 1613 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 DNMT1P26358 1616 aaKnown RBP9.56□□□□□ -0.88
RTF1-204ENST00000558117 SUPT6HQ7KZ85 1726 aaKnown RBP9.56□□□□□ -0.88
RTF1-204ENST00000558117 STRCP1A6NGW2 1772 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 MROH2AA6NES4 1674 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 JCADQ9P266 1359 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 CYP11A1P05108 521 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 HP1BP3Q5SSJ5 553 aaPredicted RBP9.56□□□□□ -0.88
RTF1-204ENST00000558117 FDX2Q6P4F2 183 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 Q6ZS46 218 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 SSBP4Q9BWG4 385 aaPredicted RBP9.56□□□□□ -0.88
RTF1-204ENST00000558117 GPN3Q9UHW5 284 aaPredicted RBP9.56□□□□□ -0.88
RTF1-204ENST00000558117 PLCH2O75038 1416 aa9.56□□□□□ -0.88
RTF1-204ENST00000558117 KDM5CP41229 1560 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 LOC100289279A0A1B0GTE1 492 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 PLEKHD1A6NEE1 506 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 GIPC1O14908 333 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 SART1O43290 800 aaKnown RBP9.55□□□□□ -0.88
RTF1-204ENST00000558117 GSTT1P30711 240 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 RSPO4Q2I0M5 234 aaPredicted RBP9.55□□□□□ -0.88
RTF1-204ENST00000558117 ANKRD34AQ69YU3 496 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 CORO1BQ9BR76 489 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 PARP2Q9UGN5 583 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 AKAP2Q9Y2D5 859 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 RGS12O14924 1447 aa9.55□□□□□ -0.88
RTF1-204ENST00000558117 MED14O60244 1454 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 ZNF518AQ6AHZ1 1483 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.54□□□□□ -0.88
RTF1-204ENST00000558117 LRP5O75197 1615 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 GNA15P30679 374 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 POU4F3Q15319 338 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 NUTM2GQ5VZR2 741 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 ANKLE2Q86XL3 938 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 DZIP1LQ8IYY4 767 aaKnown RBP9.54□□□□□ -0.88
RTF1-204ENST00000558117 FAM161BQ96MY7 647 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 BCL2L13Q9BXK5 485 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 C12orf49Q9H741 205 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 NPHP4O75161 1426 aaPredicted RBP9.54□□□□□ -0.88
RTF1-204ENST00000558117 SYNMO15061 1565 aa9.54□□□□□ -0.88
RTF1-204ENST00000558117 POLR1AO95602 1720 aaPredicted RBP9.53□□□□□ -0.88
RTF1-204ENST00000558117 H2AFB1P0C5Y9 115 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 H2AFB2P0C5Z0 115 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 ZNF157P51786 506 aaPredicted RBP9.53□□□□□ -0.88
RTF1-204ENST00000558117 PPP2R3AQ06190 1150 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 FAAP100Q0VG06 881 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 AP3B2Q13367 1082 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 UVSSAQ2YD98 709 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 NKAPLQ5M9Q1 402 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 FRMD6Q96NE9 622 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 SEMA6BQ9H3T3 888 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 CYP4F12Q9HCS2 524 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 ABCA6Q8N139 1617 aa9.53□□□□□ -0.88
RTF1-204ENST00000558117 CDK13Q14004 1512 aaKnown RBP9.52□□□□□ -0.88
RTF1-204ENST00000558117 DYRK3O43781 588 aa9.52□□□□□ -0.89
RTF1-204ENST00000558117 ADAM23O75077 832 aa9.52□□□□□ -0.89
RTF1-204ENST00000558117 MAOBP27338 520 aa9.52□□□□□ -0.89
RTF1-204ENST00000558117 HNRNPUQ00839 825 aaKnown RBP eCLIP9.52□□□□□ -0.89
RTF1-204ENST00000558117 FAM9AQ8IZU1 332 aaPredicted RBP9.52□□□□□ -0.89
RTF1-204ENST00000558117 C3orf58Q8NDZ4 430 aa9.52□□□□□ -0.89
RTF1-204ENST00000558117 UTP4Q969X6 686 aaKnown RBP9.52□□□□□ -0.89
RTF1-204ENST00000558117 NUP153P49790 1475 aaKnown RBP9.52□□□□□ -0.89
RTF1-204ENST00000558117 MLH3Q9UHC1 1453 aa9.52□□□□□ -0.89
RTF1-204ENST00000558117 MEGF11A6BM72 1044 aa9.51□□□□□ -0.89
RTF1-204ENST00000558117 GAS2O43903 313 aaKnown RBP9.51□□□□□ -0.89
RTF1-204ENST00000558117 DAB2P98082 770 aa9.51□□□□□ -0.89
RTF1-204ENST00000558117 MEX3CQ5U5Q3 659 aaKnown RBP9.51□□□□□ -0.89
RTF1-204ENST00000558117 EFCAB2Q5VUJ9 269 aa9.51□□□□□ -0.89
RTF1-204ENST00000558117 GIPC2Q8TF65 315 aa9.51□□□□□ -0.89
RTF1-204ENST00000558117 AK5Q9Y6K8 562 aa9.51□□□□□ -0.89
RTF1-204ENST00000558117 USP17L7P0C7H9 530 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 PDE3AQ14432 1141 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 EXOSC6Q5RKV6 272 aaKnown RBP9.5□□□□□ -0.89
RTF1-204ENST00000558117 UBL7Q96S82 380 aaPredicted RBP9.5□□□□□ -0.89
RTF1-204ENST00000558117 TRIM56Q9BRZ2 755 aaKnown RBP9.5□□□□□ -0.89
RTF1-204ENST00000558117 TMPRSS13Q9BYE2 586 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 NRSN2Q9GZP1 204 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 TMEM39AQ9NV64 488 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 FAM8A1Q9UBU6 413 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 SPATA31A6Q5VVP1 1343 aa9.5□□□□□ -0.89
RTF1-204ENST00000558117 RAPGEF6Q8TEU7 1601 aa9.49□□□□□ -0.89
RTF1-204ENST00000558117 DHX15O43143 795 aaKnown RBP9.49□□□□□ -0.89
RTF1-204ENST00000558117 EIF4BP23588 611 aaKnown RBP9.49□□□□□ -0.89
RTF1-204ENST00000558117 XPCQ01831 940 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms