RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 NAP1L2Q9ULW6 460 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-233ENST00000557529 SNED1Q8TER0 1413 aa14.67□□□□□ -0.06
SHMT2-233ENST00000557529 GOLGA8BA8MQT2 603 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 IFIT3O14879 490 aaKnown RBP14.66□□□□□ -0.06
SHMT2-233ENST00000557529 ZBTB7AO95365 584 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 ZSCAN22P10073 491 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-233ENST00000557529 DPEP1P16444 411 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 KIAA2012Q0VF49 1180 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 TMEM67Q5HYA8 995 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 RRP12Q5JTH9 1297 aaKnown RBP14.66□□□□□ -0.06
SHMT2-233ENST00000557529 SOGA3Q5TF21 947 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 STRIP1Q5VSL9 837 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 SGMS1Q86VZ5 419 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 TMTC2Q8N394 836 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 SMARCC2Q8TAQ2 1214 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 IGDCC4Q8TDY8 1250 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 SH3RF3Q8TEJ3 882 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-233ENST00000557529 ZSWIM5Q9P217 1185 aa14.66□□□□□ -0.06
SHMT2-233ENST00000557529 ERICH2A1L162 156 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 C21orf2O43822 256 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 ORC4O43929 436 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 ECE2O60344 883 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 LARP1BQ659C4 914 aaKnown RBP14.65□□□□□ -0.06
SHMT2-233ENST00000557529 ILDR1Q86SU0 546 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-233ENST00000557529 PSMD1Q99460 953 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 INCENPQ9NQS7 918 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 GPHNQ9NQX3 736 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-233ENST00000557529 MCM9Q9NXL9 1143 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 MKRN1Q9UHC7 482 aaKnown RBP14.65□□□□□ -0.06
SHMT2-233ENST00000557529 BRPF3Q9ULD4 1205 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 ATP6V1DQ9Y5K8 247 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 TACC3Q9Y6A5 838 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 CHD4Q14839 1912 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 KIF13BQ9NQT8 1826 aa14.65□□□□□ -0.06
SHMT2-233ENST00000557529 MYH2Q9UKX2 1941 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 KCNA3P22001 575 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 PDE4BQ07343 736 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 NFXL1Q6ZNB6 911 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 TEX11Q8IYF3 940 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 CERS5Q8N5B7 392 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 FAM184AQ8NB25 1140 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 NSUN7Q8NE18 718 aaKnown RBP14.64□□□□□ -0.07
SHMT2-233ENST00000557529 UBAC1Q9BSL1 405 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 VPS33BQ9H267 617 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 DBNDD1Q9H9R9 158 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 LY9Q9HBG7 655 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 TTF2Q9UNY4 1162 aaKnown RBP14.64□□□□□ -0.07
SHMT2-233ENST00000557529 MTMR6Q9Y217 621 aa14.64□□□□□ -0.07
SHMT2-233ENST00000557529 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-233ENST00000557529 CYP2D7A0A087X1C5 515 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 USP17L3A6NCW0 530 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 USP17L4A6NCW7 530 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 CCDC69A6NI79 296 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 JAK2O60674 1132 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 RCAN1P53805 252 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 CCT2P78371 535 aaKnown RBP14.63□□□□□ -0.07
SHMT2-233ENST00000557529 WTAPQ15007 396 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 SKOR2Q2VWA4 1001 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-233ENST00000557529 C12orf60Q5U649 245 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 FOXD4L5Q5VV16 416 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-233ENST00000557529 HHIPL2Q6UWX4 724 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 SYNE3Q6ZMZ3 975 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 USP17L1Q7RTZ2 530 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 TGFBRAP1Q8WUH2 860 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 FOXD4L4Q8WXT5 416 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-233ENST00000557529 MRIQ9BWK5 157 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 PIM2Q9P1W9 311 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 HPS5Q9UPZ3 1129 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 ATF5Q9Y2D1 282 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-233ENST00000557529 DAGLAQ9Y4D2 1042 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 ROBO3Q96MS0 1386 aa14.63□□□□□ -0.07
SHMT2-233ENST00000557529 PTPDC1A2A3K4 754 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 CPLX1O14810 134 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 PPIP5K2O43314 1243 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 CDKL5O76039 1030 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 F13A1P00488 732 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 RHBDL3P58872 404 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 HDLBPQ00341 1268 aaKnown RBP14.62□□□□□ -0.07
SHMT2-233ENST00000557529 AOC3Q16853 763 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 DACT2Q5SW24 774 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 CPLX2Q6PUV4 134 aaKnown RBP14.62□□□□□ -0.07
SHMT2-233ENST00000557529 APOA5Q6Q788 366 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 IQCA1Q86XH1 822 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 NKX2-3Q8TAU0 364 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 UPF1Q92900 1129 aaKnown RBP eCLIP14.62□□□□□ -0.074e-7■■■■□ 25.7
SHMT2-233ENST00000557529 TEKT1Q969V4 418 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 NCOA5Q9HCD5 579 aaKnown RBP14.62□□□□□ -0.07
SHMT2-233ENST00000557529 SLC12A7Q9Y666 1083 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 LAMB1P07942 1786 aa14.62□□□□□ -0.07
SHMT2-233ENST00000557529 VPS37CA5D8V6 355 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-233ENST00000557529 ZBTB43O43298 467 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 RANBP6O60518 1105 aaKnown RBP14.61□□□□□ -0.07
SHMT2-233ENST00000557529 CTDNEP1O95476 244 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 POLR3DP05423 398 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-233ENST00000557529 USP17L8P0C7I0 530 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 CYP2D6P10635 497 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 METAP2P50579 478 aaKnown RBP eCLIP14.61□□□□□ -0.079e-7■■□□□ 14.5
SHMT2-233ENST00000557529 R3HDM1Q15032 1099 aaKnown RBP14.61□□□□□ -0.07
SHMT2-233ENST00000557529 MCTP1Q6DN14 999 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 STK11IPQ8N1F8 1099 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms