RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 TRAK2O60296 914 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 TAF5LO75529 589 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 USP2O75604 605 aaPredicted RBP7.48□□□□□ -1.21
VPS33B-207ENST00000557470 IREB2P48200 963 aaKnown RBP7.48□□□□□ -1.21
VPS33B-207ENST00000557470 RBM25P49756 843 aaKnown RBP7.48□□□□□ -1.21
VPS33B-207ENST00000557470 SP3Q02447 781 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 CALD1Q05682 793 aaKnown RBP7.48□□□□□ -1.21
VPS33B-207ENST00000557470 SUPT20HL1Q3ZLR7 823 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 CFAP100Q494V2 611 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 OTUD7BQ6GQQ9 843 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 TTC13Q8NBP0 860 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 ZNF333Q96JL9 665 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 PRMT6Q96LA8 375 aaPredicted RBP7.48□□□□□ -1.21
VPS33B-207ENST00000557470 PLA2G12BQ9BX93 195 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 JAG2Q9Y219 1238 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 SZT2Q5T011 3432 aa7.48□□□□□ -1.21
VPS33B-207ENST00000557470 MYO1BO43795 1136 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 CSF1RP07333 972 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 IL1R1P14778 569 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 CASP7P55210 303 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 GCKRQ14397 625 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 RASA3Q14644 834 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 C15orf52Q6ZUT6 534 aaKnown RBP7.47□□□□□ -1.21
VPS33B-207ENST00000557470 G2E3Q7L622 706 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 ANKRD13AQ8IZ07 590 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 HELBQ8NG08 1087 aaPredicted RBP7.47□□□□□ -1.21
VPS33B-207ENST00000557470 TSR2Q969E8 191 aaKnown RBP7.47□□□□□ -1.21
VPS33B-207ENST00000557470 OPTNQ96CV9 577 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 STK31Q9BXU1 1019 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 ELP3Q9H9T3 547 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 RBM27Q9P2N5 1060 aaKnown RBP7.47□□□□□ -1.21
VPS33B-207ENST00000557470 PTCH2Q9Y6C5 1203 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 OTOFQ9HC10 1997 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 ECM29Q5VYK3 1845 aa7.47□□□□□ -1.21
VPS33B-207ENST00000557470 RANBP2P49792 3224 aaKnown RBP7.47□□□□□ -1.21
VPS33B-207ENST00000557470 MYCP01106 439 aaPredicted RBP7.46□□□□□ -1.22
VPS33B-207ENST00000557470 RBM5P52756 815 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS33B-207ENST00000557470 PDE4DQ08499 809 aa7.46□□□□□ -1.22
VPS33B-207ENST00000557470 DDX10Q13206 875 aaKnown RBP7.46□□□□□ -1.22
VPS33B-207ENST00000557470 SLC9C1Q4G0N8 1177 aa7.46□□□□□ -1.22
VPS33B-207ENST00000557470 ZNF804AQ7Z570 1209 aa7.46□□□□□ -1.22
VPS33B-207ENST00000557470 BRI3BPQ8WY22 251 aa7.46□□□□□ -1.22
VPS33B-207ENST00000557470 CHMP4AQ9BY43 222 aa7.46□□□□□ -1.22
VPS33B-207ENST00000557470 TSR3Q9UJK0 312 aaKnown RBP7.46□□□□□ -1.22
VPS33B-207ENST00000557470 CCL15-CCL14A0A0B4J2E2 113 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 ANKRD18BA2A2Z9 1011 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 H0YGN5 161 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 TRIM66O15016 1216 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 MFAP1P55081 439 aaKnown RBP7.45□□□□□ -1.22
VPS33B-207ENST00000557470 FKBP1AP62942 108 aaKnown RBP7.45□□□□□ -1.22
VPS33B-207ENST00000557470 PTGDRQ13258 359 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 TNFAIP1Q13829 316 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 VGLL4Q14135 290 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 TAF1CQ15572 869 aaPredicted RBP7.45□□□□□ -1.22
VPS33B-207ENST00000557470 CCL15Q16663 113 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 SLC4A8Q2Y0W8 1093 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.45□□□□□ -1.22
VPS33B-207ENST00000557470 FAM43AQ8N2R8 423 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 TEPSINQ96N21 525 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 ARHGAP39Q9C0H5 1083 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 ZNF70Q9UC06 446 aaPredicted RBP7.45□□□□□ -1.22
VPS33B-207ENST00000557470 A0A1B0GUL6 1792 aa7.45□□□□□ -1.22
VPS33B-207ENST00000557470 GTF2A2P52657 109 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 FOXO4P98177 505 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 IFIT5Q13325 482 aaKnown RBP7.44□□□□□ -1.22
VPS33B-207ENST00000557470 TWISTNBQ3B726 338 aaPredicted RBP7.44□□□□□ -1.22
VPS33B-207ENST00000557470 MFSD14BQ5SR56 506 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 NBPF11Q86T75 865 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 LINS1Q8NG48 757 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS33B-207ENST00000557470 SH3TC2Q8TF17 1288 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 DNAAF4Q8WXU2 420 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 TMEM39BQ9GZU3 492 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 MYH16Q9H6N6 1097 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 TDRD3Q9H7E2 651 aaKnown RBP7.44□□□□□ -1.22
VPS33B-207ENST00000557470 ZFYVE28Q9HCC9 887 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 CHMP3Q9Y3E7 222 aa7.44□□□□□ -1.22
VPS33B-207ENST00000557470 ZSWIM8A7E2V4 1837 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 TCP10L2B9ZVM9 353 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 PLIN1O60240 522 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 PPP4CP60510 307 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 FKBP5Q13451 457 aaPredicted RBP7.43□□□□□ -1.22
VPS33B-207ENST00000557470 ARHGEF6Q15052 776 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 NYAP1Q6ZVC0 841 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 DZIP1LQ8IYY4 767 aaKnown RBP7.43□□□□□ -1.22
VPS33B-207ENST00000557470 SHISA4Q96DD7 197 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 ZNF594Q96JF6 807 aaPredicted RBP7.43□□□□□ -1.22
VPS33B-207ENST00000557470 GZF1Q9H116 711 aaPredicted RBP7.43□□□□□ -1.22
VPS33B-207ENST00000557470 SERPINA10Q9UK55 444 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 TTF2Q9UNY4 1162 aaKnown RBP7.43□□□□□ -1.22
VPS33B-207ENST00000557470 FAM205AQ6ZU69 1335 aa7.43□□□□□ -1.22
VPS33B-207ENST00000557470 A0A0C4DFX4 3053 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 ARAP2Q8WZ64 1704 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 TLR2O60603 784 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 GYG1P46976 350 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 LACTBP83111 547 aaPredicted RBP7.42□□□□□ -1.22
VPS33B-207ENST00000557470 GRIK5Q16478 980 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 EPHA10Q5JZY3 1008 aa7.42□□□□□ -1.22
VPS33B-207ENST00000557470 FOXD4L5Q5VV16 416 aaPredicted RBP7.42□□□□□ -1.22
VPS33B-207ENST00000557470 LMBR1LQ6UX01 489 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms