RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CNGA4	Q8IV77	575 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	XAGE2	Q96GT9	111 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	PGBD1	Q96JS3	809 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	hCG_1642624	A0A1W2PR95	340 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	TMEM232	C9JQI7	657 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	MYZAP	P0CAP1	466 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	TIMM10	P62072	90 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	CALML4	Q96GE6	196 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	RNF41	Q9H4P4	317 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	FAM204A	Q9H8W3	233 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	PRDM4	Q9UKN5	801 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	ARHGAP6	O43182	974 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	INPP5B	P32019	993 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	GNGT1	P63211	74 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	PROSER3	Q2NL68	480 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	SLFNL1	Q499Z3	407 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	PIK3AP1	Q6ZUJ8	805 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	THEMIS	Q8N1K5	641 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	METTL22	Q9BUU2	404 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	TM6SF1	Q9BZW5	370 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	MORC2	Q9Y6X9	1032 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	GOLGA6B	A6NDN3	693 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZMYND10	O75800	440 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	IL15	P40933	162 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	KRT40	Q6A162	431 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	STAM	Q92783	540 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	CCDC114	Q96M63	670 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	PARD6B	Q9BYG5	372 aa		5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	CTDP1	Q9Y5B0	961 aa	Predicted RBP	5.63	□□□□□ -1.51
SYNE2-223	ENST00000557005	MAGEB6P1	A0A0J9YX57	407 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	KRT86	O43790	486 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PRDM1	O75626	825 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NEFH	P12036	1026 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ERCC3	P19447	782 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CYP7A1	P22680	504 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PDIA3	P30101	505 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ASIC1	P78348	528 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	UBE4A	Q14139	1066 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	BRD3	Q15059	726 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	SPECC1L	Q69YQ0	1117 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	GIGYF2	Q6Y7W6	1299 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PAIP2	Q9BPZ3	127 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	MKNK2	Q9HBH9	465 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CPSF1	Q10570	1443 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	VWDE	Q8N2E2	1590 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	LIG3	P49916	1009 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PAK1	Q13153	545 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CHRNA2	Q15822	529 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	LDHAL6A	Q6ZMR3	332 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NUTM2A	Q8IVF1	878 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	SECISBP2L	Q93073	1101 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	TTC14	Q96N46	770 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CNNM2	Q9H8M5	875 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	MAN1B1	Q9UKM7	699 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NFE2L3	Q9Y4A8	694 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZMYM6	O95789	1325 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	MBD4	O95243	580 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	FGFR1OP	O95684	399 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PNMA6A	P0CW24	399 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	TMEM266	Q2M3C6	531 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ANKRD18A	Q8IVF6	992 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NSUN7	Q8NE18	718 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ACRBP	Q8NEB7	543 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	HELB	Q8NG08	1087 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	LINS1	Q8NG48	757 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	CAPN7	Q9Y6W3	813 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	USP32	Q8NFA0	1604 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	GOLGA6L10	A0A0M3HER8	536 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	TRIM75P	A6NK02	468 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005		E7EVH7	732 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ENC1	O14682	589 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	STARD3NL	O95772	234 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	KRT13	P13646	458 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZSCAN20	P17040	1043 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZNF76	P36508	570 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PLCD1	P51178	756 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	GUCY2F	P51841	1108 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	MORC3	Q14149	939 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NCAPH2	Q6IBW4	605 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	IQCA1	Q86XH1	822 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	IFNL2	Q8IZJ0	200 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	IL17RE	Q8NFR9	667 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	EAF2	Q96CJ1	260 aa	Predicted RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	NOC4L	Q9BVI4	516 aa	Known RBP	5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	SAMM50	Q9Y512	469 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	DEPDC5	O75140	1603 aa		5.62	□□□□□ -1.51
SYNE2-223	ENST00000557005	PSD	A5PKW4	1024 aa	Predicted RBP	5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	NEURL1B	A8MQ27	555 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	AP5Z1	O43299	807 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZFY	P08048	801 aa	Predicted RBP	5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	KIF5A	Q12840	1032 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	CAVIN4	Q5BKX8	364 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	KRT28	Q7Z3Y7	464 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	MAP4K1	Q92918	833 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	ALK	Q9UM73	1620 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	KCNJ18	B7U540	433 aa		5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	BUB1B	O60566	1050 aa	Predicted RBP	5.61	□□□□□ -1.51
SYNE2-223	ENST00000557005	ZAP70	P43403	619 aa		5.61	□□□□□ -1.51

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