RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 EGFRP00533 1210 aa28.2■■■□□ 2.1
SIX4-203ENST00000556952 SDR42E1Q8WUS8 393 aa28.2■■■□□ 2.1
SIX4-203ENST00000556952 TEKT1Q969V4 418 aa28.2■■■□□ 2.1
SIX4-203ENST00000556952 DAGLAQ9Y4D2 1042 aa28.2■■■□□ 2.1
SIX4-203ENST00000556952 TAF6LQ9Y6J9 622 aa28.2■■■□□ 2.1
SIX4-203ENST00000556952 SAMD7Q7Z3H4 446 aa28.19■■■□□ 2.1
SIX4-203ENST00000556952 UPF3BQ9BZI7 483 aaKnown RBP28.19■■■□□ 2.1
SIX4-203ENST00000556952 DAXXQ9UER7 740 aaPredicted RBP28.19■■■□□ 2.1
SIX4-203ENST00000556952 CYP46A1Q9Y6A2 500 aa28.19■■■□□ 2.1
SIX4-203ENST00000556952 H7C1D1 291 aa28.18■■■□□ 2.1
SIX4-203ENST00000556952 KIAA0825Q8IV33 1275 aa28.18■■■□□ 2.1
SIX4-203ENST00000556952 DDX60LQ5H9U9 1706 aaKnown RBP28.18■■■□□ 2.1
SIX4-203ENST00000556952 HMGB1P09429 215 aaKnown RBP28.17■■■□□ 2.1
SIX4-203ENST00000556952 MCM2P49736 904 aa28.17■■■□□ 2.1
SIX4-203ENST00000556952 TBC1D10BQ4KMP7 808 aaPredicted RBP28.17■■■□□ 2.1
SIX4-203ENST00000556952 BLOC1S2Q6QNY1 142 aa28.17■■■□□ 2.1
SIX4-203ENST00000556952 RUFY3Q7L099 469 aa28.17■■■□□ 2.1
SIX4-203ENST00000556952 NEK1Q96PY6 1258 aa28.17■■■□□ 2.1
SIX4-203ENST00000556952 E7EWF7 191 aa28.16■■■□□ 2.1
SIX4-203ENST00000556952 USP17L8P0C7I0 530 aa28.16■■■□□ 2.1
SIX4-203ENST00000556952 HIRAP54198 1017 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 ZNF280AP59817 542 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 PNMA8AQ86V59 439 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 SH3RF3Q8TEJ3 882 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 HAND2P61296 217 aa28.16■■■□□ 2.1
SIX4-203ENST00000556952 STOX1Q6ZVD7 989 aa28.16■■■□□ 2.1
SIX4-203ENST00000556952 USP50Q70EL3 339 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 RBM46Q8TBY0 533 aaKnown RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 DCP1AQ9NPI6 582 aaPredicted RBP28.16■■■□□ 2.1
SIX4-203ENST00000556952 SERPINA10Q9UK55 444 aa28.16■■■□□ 2.1
SIX4-203ENST00000556952 CD2BP2O95400 341 aaKnown RBP28.15■■■□□ 2.1
SIX4-203ENST00000556952 CRKP46108 304 aa28.15■■■□□ 2.1
SIX4-203ENST00000556952 RBM26Q5T8P6 1007 aaKnown RBP28.15■■■□□ 2.1
SIX4-203ENST00000556952 ZDHHC15Q96MV8 337 aa28.15■■■□□ 2.1
SIX4-203ENST00000556952 TTC14Q96N46 770 aa28.15■■■□□ 2.1
SIX4-203ENST00000556952 USP5P45974 858 aa28.14■■■□□ 2.1
SIX4-203ENST00000556952 RHBDL3P58872 404 aa28.14■■■□□ 2.1
SIX4-203ENST00000556952 LDHDQ86WU2 507 aa28.14■■■□□ 2.1
SIX4-203ENST00000556952 POLR2AP24928 1970 aaKnown RBP28.14■■■□□ 2.09
SIX4-203ENST00000556952 K7ELQ4 463 aaPredicted RBP28.13■■■□□ 2.09
SIX4-203ENST00000556952 RPS6KB1P23443 525 aa28.13■■■□□ 2.09
SIX4-203ENST00000556952 ARPP21Q9UBL0 812 aaPredicted RBP28.13■■■□□ 2.09
SIX4-203ENST00000556952 ANAPC4Q9UJX5 808 aa28.13■■■□□ 2.09
SIX4-203ENST00000556952 CLEC11AQ9Y240 323 aa28.13■■■□□ 2.09
SIX4-203ENST00000556952 KIF4BQ2VIQ3 1234 aa28.12■■■□□ 2.09
SIX4-203ENST00000556952 TEX11Q8IYF3 940 aa28.12■■■□□ 2.09
SIX4-203ENST00000556952 NBPF3Q9H094 633 aa28.12■■■□□ 2.09
SIX4-203ENST00000556952 MYOZ2Q9NPC6 264 aa28.12■■■□□ 2.09
SIX4-203ENST00000556952 MYH1P12882 1939 aa28.12■■■□□ 2.09
SIX4-203ENST00000556952 PDRG1Q9NUG6 133 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 MKRN1Q9UHC7 482 aaKnown RBP28.11■■■□□ 2.09
SIX4-203ENST00000556952 PPARAQ07869 468 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 SBK1Q52WX2 424 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 CHADLQ6NUI6 762 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 TBC1D10CQ8IV04 446 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 SMC1BQ8NDV3 1235 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 NCOA7Q8NI08 942 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 ALDH8A1Q9H2A2 487 aaPredicted RBP28.11■■■□□ 2.09
SIX4-203ENST00000556952 HDAC9Q9UKV0 1011 aa28.11■■■□□ 2.09
SIX4-203ENST00000556952 TRDNQ13061 729 aa28.1■■■□□ 2.09
SIX4-203ENST00000556952 APOBEC3HQ6NTF7 200 aaKnown RBP28.1■■■□□ 2.09
SIX4-203ENST00000556952 CTR9Q6PD62 1173 aa28.1■■■□□ 2.09
SIX4-203ENST00000556952 OGFOD1Q8N543 542 aa28.1■■■□□ 2.09
SIX4-203ENST00000556952 STAG1Q8WVM7 1258 aa28.1■■■□□ 2.09
SIX4-203ENST00000556952 RNF41Q9H4P4 317 aaPredicted RBP28.1■■■□□ 2.09
SIX4-203ENST00000556952 CPA1P15085 419 aa28.09■■■□□ 2.09
SIX4-203ENST00000556952 MMP14P50281 582 aa28.09■■■□□ 2.09
SIX4-203ENST00000556952 C1QTNF8P60827 252 aa28.09■■■□□ 2.09
SIX4-203ENST00000556952 DHX32Q7L7V1 743 aaKnown RBP28.09■■■□□ 2.09
SIX4-203ENST00000556952 RALYLQ86SE5 291 aaKnown RBP28.09■■■□□ 2.09
SIX4-203ENST00000556952 TGFBRAP1Q8WUH2 860 aa28.09■■■□□ 2.09
SIX4-203ENST00000556952 CNNM2Q9H8M5 875 aa28.09■■■□□ 2.09
SIX4-203ENST00000556952 ASTN2O75129 1339 aaPredicted RBP28.09■■■□□ 2.09
SIX4-203ENST00000556952 AKNAD1Q5T1N1 836 aa28.08■■■□□ 2.09
SIX4-203ENST00000556952 MAP1SQ66K74 1059 aaPredicted RBP28.08■■■□□ 2.09
SIX4-203ENST00000556952 AMOTL1Q8IY63 956 aa28.08■■■□□ 2.09
SIX4-203ENST00000556952 PCDHAC2Q9Y5I4 1007 aa28.08■■■□□ 2.09
SIX4-203ENST00000556952 MINDY4BA8MYZ0 360 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 USP17L12C9JPN9 530 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 USP17L21D6R901 530 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 PCP11498 1178 aaKnown RBP28.07■■■□□ 2.08
SIX4-203ENST00000556952 FLT1P17948 1338 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 AK2P54819 239 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 ANKRD1Q15327 319 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 MCM9Q9NXL9 1143 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 WDR19Q8NEZ3 1342 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 RBM5P52756 815 aaKnown RBP eCLIP28.07■■■□□ 2.08
SIX4-203ENST00000556952 CTDSPL2Q05D32 466 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 USP40Q9NVE5 1235 aa28.07■■■□□ 2.08
SIX4-203ENST00000556952 SLC4A3P48751 1232 aa28.06■■■□□ 2.08
SIX4-203ENST00000556952 FSTL1Q12841 308 aa28.06■■■□□ 2.08
SIX4-203ENST00000556952 CDC42EP5Q6NZY7 148 aa28.06■■■□□ 2.08
SIX4-203ENST00000556952 MFSD6Q6ZSS7 791 aa28.06■■■□□ 2.08
SIX4-203ENST00000556952 MB21D2Q8IYB1 491 aaPredicted RBP28.06■■■□□ 2.08
SIX4-203ENST00000556952 ROBO3Q96MS0 1386 aa28.05■■■□□ 2.08
SIX4-203ENST00000556952 SLC3A2P08195 630 aaKnown RBP28.05■■■□□ 2.08
SIX4-203ENST00000556952 EXOSC10Q01780 885 aaKnown RBP28.05■■■□□ 2.08
SIX4-203ENST00000556952 NBPF9Q3BBW0 867 aa28.05■■■□□ 2.08
SIX4-203ENST00000556952 CFAP100Q494V2 611 aa28.05■■■□□ 2.08
SIX4-203ENST00000556952 MAPKAPK5Q8IW41 473 aa28.05■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms