RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IDI2Q9BXS1 227 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 UNC93B1Q9H1C4 597 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 SLC45A1Q9Y2W3 748 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 LRRFIP2Q9Y608 721 aaKnown RBP15.78■□□□□ 0.12
SHMT2-223ENST00000556689 FARP2O94887 1054 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-223ENST00000556689 TFRCP02786 760 aaKnown RBP15.77■□□□□ 0.12
SHMT2-223ENST00000556689 FLT3LGP49771 235 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 RGS3P49796 1198 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 MAP3K10Q02779 954 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 ZGPATQ8N5A5 531 aaKnown RBP15.77■□□□□ 0.12
SHMT2-223ENST00000556689 PXYLP1Q8TE99 480 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 SIL1Q9H173 461 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 PRO3102Q9H379 93 aa15.77■□□□□ 0.12
SHMT2-223ENST00000556689 ZNF521Q96K83 1311 aa15.76■□□□□ 0.11
SHMT2-223ENST00000556689 ZBTB7BO15156 539 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-223ENST00000556689 CTNND1O60716 968 aaKnown RBP15.76■□□□□ 0.11
SHMT2-223ENST00000556689 PHKA1P46020 1223 aa15.76■□□□□ 0.11
SHMT2-223ENST00000556689 IRF5Q13568 498 aa15.76■□□□□ 0.11
SHMT2-223ENST00000556689 TNPO2O14787 897 aaKnown RBP15.75■□□□□ 0.11
SHMT2-223ENST00000556689 EVI5O60447 810 aa15.75■□□□□ 0.11
SHMT2-223ENST00000556689 ELNP15502 786 aa15.75■□□□□ 0.11
SHMT2-223ENST00000556689 SH3BP5LQ7L8J4 393 aa15.75■□□□□ 0.11
SHMT2-223ENST00000556689 SLF2Q8IX21 1173 aa15.75■□□□□ 0.11
SHMT2-223ENST00000556689 SMCR8Q8TEV9 937 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-223ENST00000556689 DDTLA6NHG4 134 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 TRIM75PA6NK02 468 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 E9PSI1 815 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 ZBTB22O15209 634 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 INHAP05111 366 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 UBTFL1P0CB47 393 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 IL15P40933 162 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 CCDC102BQ68D86 513 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 DZIP1Q86YF9 867 aaKnown RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 FAM163AQ96GL9 167 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 DEFB118Q96PH6 123 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 RANBP2P49792 3224 aaKnown RBP15.74■□□□□ 0.11
SHMT2-223ENST00000556689 ATRNL1Q5VV63 1379 aa15.74■□□□□ 0.11
SHMT2-223ENST00000556689 GAKO14976 1311 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 A0A1W2PPC1 479 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 ALDH1L2Q3SY69 923 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 SPTY2D1Q68D10 685 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-223ENST00000556689 ANKRD13CQ8N6S4 541 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 COA7Q96BR5 231 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 ABCF2Q9UG63 623 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 HDAC5Q9UQL6 1122 aa15.73■□□□□ 0.11
SHMT2-223ENST00000556689 TRIOBPQ9H2D6 2365 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 AK9Q5TCS8 1911 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 TIMM10P62072 90 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 PICALMQ13492 652 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 PAK6Q9NQU5 681 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-223ENST00000556689 TAOK2Q9UL54 1235 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 AGTPBP1Q9UPW5 1226 aa15.72■□□□□ 0.11
SHMT2-223ENST00000556689 TBC1D12O60347 775 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 SLURP2P0DP57 97 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 ADORA1P30542 326 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 BTDP43251 543 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 CRISPLD2Q9H0B8 497 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 DDX4Q9NQI0 724 aaKnown RBP15.71■□□□□ 0.11
SHMT2-223ENST00000556689 STAP2Q9UGK3 403 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 PNMA3Q9UL41 463 aa15.71■□□□□ 0.11
SHMT2-223ENST00000556689 PA2G4Q9UQ80 394 aaKnown RBP15.71■□□□□ 0.11
SHMT2-223ENST00000556689 CEP290O15078 2479 aa15.71■□□□□ 0.1
SHMT2-223ENST00000556689 SLFN5Q08AF3 891 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 RASGRF1Q13972 1273 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 NECAB2Q7Z6G3 386 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 SLC17A8Q8NDX2 589 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 PAWRQ96IZ0 340 aaKnown RBP15.7■□□□□ 0.1
SHMT2-223ENST00000556689 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.7■□□□□ 0.1
SHMT2-223ENST00000556689 COPRSQ9NQ92 184 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 SMC4Q9NTJ3 1288 aa15.7■□□□□ 0.1
SHMT2-223ENST00000556689 GPR75-ASB3A0A0A6YYF3 556 aa15.69■□□□□ 0.1
SHMT2-223ENST00000556689 FAM110CQ1W6H9 321 aa15.69■□□□□ 0.1
SHMT2-223ENST00000556689 TREML2Q5T2D2 321 aa15.69■□□□□ 0.1
SHMT2-223ENST00000556689 CCDC84Q86UT8 332 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-223ENST00000556689 PROCA1Q8NCQ7 364 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-223ENST00000556689 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-223ENST00000556689 MROH7-TTC4A0A0A0MT08 1334 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 PDS5AQ29RF7 1337 aaKnown RBP15.68■□□□□ 0.1
SHMT2-223ENST00000556689 RFX7Q2KHR2 1363 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 NPM3O75607 178 aaKnown RBP15.68■□□□□ 0.1
SHMT2-223ENST00000556689 GCLCP48506 637 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-223ENST00000556689 RHBDL3P58872 404 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 MECOMQ03112 1051 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 SPP2Q13103 211 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 XAGE2Q96GT9 111 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.68■□□□□ 0.14e-7■□□□□ 11.2
SHMT2-223ENST00000556689 OSBPL5Q9H0X9 879 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-223ENST00000556689 NOB1Q9ULX3 412 aaKnown RBP15.68■□□□□ 0.1
SHMT2-223ENST00000556689 AKAP2Q9Y2D5 859 aa15.68■□□□□ 0.1
SHMT2-223ENST00000556689 A0A1B0GUL7 405 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 DLL1O00548 723 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 MAP4K4O95819 1239 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-223ENST00000556689 LDHCP07864 332 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 PABPC4Q13310 644 aaKnown RBP eCLIP15.67■□□□□ 0.1
SHMT2-223ENST00000556689 MVPQ14764 893 aaKnown RBP15.67■□□□□ 0.1
SHMT2-223ENST00000556689 ANKLE1Q8NAG6 615 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 ZNF280CQ8ND82 737 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 TBC1D2Q9BYX2 928 aa15.67■□□□□ 0.1
SHMT2-223ENST00000556689 ZNF316A6NFI3 1004 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms