RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RANBP6O60518 1105 aaKnown RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 MARCKSP29966 332 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 NCBP1Q09161 790 aaKnown RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 SHC4Q6S5L8 630 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 MAGEB6Q8N7X4 407 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 STAG1Q8WVM7 1258 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 AIFM3Q96NN9 605 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 IFNKQ9P0W0 207 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 STRCQ7RTU9 1775 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 ECM29Q5VYK3 1845 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 PSDA5PKW4 1024 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 RASGRF1Q13972 1273 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 SART3Q15020 963 aaKnown RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 NKX2-3Q8TAU0 364 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 PHKBQ93100 1093 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 FBXW7Q969H0 707 aa15.57■□□□□ 0.08
SHMT2-222ENST00000555774 NOL10Q9BSC4 688 aaKnown RBP15.57■□□□□ 0.08
SHMT2-222ENST00000555774 FAM177BA6PVY3 158 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 EXOC5O00471 708 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 SAFBQ15424 915 aaKnown RBP eCLIP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 PARP10Q53GL7 1025 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 PPP4R3BQ5MIZ7 849 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 MFSD6Q6ZSS7 791 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 TMTC2Q8N394 836 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 MPHOSPH8Q99549 860 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 SENP2Q9HC62 589 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 ZSWIM5Q9P217 1185 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 GSG1L2A8MUP6 293 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 RXRAP19793 462 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 SFPQP23246 707 aaKnown RBP eCLIP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 EIF5P55010 431 aaKnown RBP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 TMC6Q7Z403 805 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 TRIM22Q8IYM9 498 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 RNF41Q9H4P4 317 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 CGNQ9P2M7 1197 aaKnown RBP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 HOOK1Q9UJC3 728 aaKnown RBP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 SLIT2O94813 1529 aa15.56■□□□□ 0.08
SHMT2-222ENST00000555774 ZNF335Q9H4Z2 1342 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-222ENST00000555774 CCDC196A0A1B0GTZ2 297 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 USP27XA6NNY8 438 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 BIN1O00499 593 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 MYL5Q02045 173 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 NOSTRINQ8IVI9 506 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 KRI1Q8N9T8 703 aaKnown RBP15.55■□□□□ 0.08
SHMT2-222ENST00000555774 FEZ1Q99689 392 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 UTP14AQ9BVJ6 771 aaKnown RBP15.55■□□□□ 0.08
SHMT2-222ENST00000555774 SLC26A6Q9BXS9 759 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 CCP110O43303 1012 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 MMP1P03956 469 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 FANCCQ00597 558 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 CCDC152Q4G0S7 254 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 OLFM4Q6UX06 510 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 KRBA2Q6ZNG9 492 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 KIF18AQ8NI77 898 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 ZMYND15Q9H091 742 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 FOXP1Q9H334 677 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-222ENST00000555774 ARMT1Q9H993 441 aa15.55■□□□□ 0.08
SHMT2-222ENST00000555774 WNK3Q9BYP7 1800 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 CTDSPL2Q05D32 466 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 RTN1Q16799 776 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 SUSD4Q5VX71 490 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 MORC2Q9Y6X9 1032 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-222ENST00000555774 RREB1Q92766 1687 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 ERICH2A1L162 156 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 IGHMBP2P38935 993 aaKnown RBP15.54■□□□□ 0.08
SHMT2-222ENST00000555774 TDO2P48775 406 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 WTAPQ15007 396 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 PPP2R5BQ15173 497 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 RILPL1Q5EBL4 403 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 ARMCX5Q6P1M9 558 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 HELBQ8NG08 1087 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-222ENST00000555774 CDCA7Q9BWT1 371 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-222ENST00000555774 KCNH3Q9ULD8 1083 aa15.54■□□□□ 0.08
SHMT2-222ENST00000555774 MYO5AQ9Y4I1 1855 aaKnown RBP15.54■□□□□ 0.08
SHMT2-222ENST00000555774 DEXIO95424 95 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 CNNM3Q8NE01 707 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 CCDC87Q9NVE4 849 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 SLC4A4Q9Y6R1 1079 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 CICQ96RK0 1608 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-222ENST00000555774 LAMB2P55268 1798 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 BCORQ6W2J9 1755 aa15.53■□□□□ 0.08
SHMT2-222ENST00000555774 ZNF579Q8NAF0 562 aaKnown RBP15.52■□□□□ 0.08
SHMT2-222ENST00000555774 ZNF592Q92610 1267 aa15.52■□□□□ 0.08
SHMT2-222ENST00000555774 ERO1AQ96HE7 468 aa15.52■□□□□ 0.08
SHMT2-222ENST00000555774 MYL10Q9BUA6 226 aa15.52■□□□□ 0.08
SHMT2-222ENST00000555774 HSD3B7Q9H2F3 369 aa15.52■□□□□ 0.08
SHMT2-222ENST00000555774 CHD4Q14839 1912 aa15.52■□□□□ 0.08
SHMT2-222ENST00000555774 E4F1Q66K89 784 aaPredicted RBP15.52■□□□□ 0.07
SHMT2-222ENST00000555774 METTL16Q86W50 562 aaKnown RBP15.52■□□□□ 0.07
SHMT2-222ENST00000555774 LCORLQ8N3X6 602 aa15.52■□□□□ 0.07
SHMT2-222ENST00000555774 CEP131Q9UPN4 1083 aa15.52■□□□□ 0.07
SHMT2-222ENST00000555774 TACC3Q9Y6A5 838 aa15.52■□□□□ 0.07
SHMT2-222ENST00000555774 PTPREP23469 700 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 LMOD1P29536 600 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 PNOCQ13519 176 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 INTS5Q6P9B9 1019 aaKnown RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 DIS3L2Q8IYB7 885 aaKnown RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 SYTL4Q96C24 671 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 CLIC6Q96NY7 704 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 TRMT1Q9NXH9 659 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms