RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 TTC6Q86TZ1 520 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 ZSCAN29Q8IWY8 852 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 HOOK2Q96ED9 719 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 L3MBTL3Q96JM7 780 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 IL25Q9H293 177 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 DHX36Q9H2U1 1008 aaKnown RBP13.3□□□□□ -0.28
SHMT2-220ENST00000555634 CNNM2Q9H8M5 875 aa13.3□□□□□ -0.28
SHMT2-220ENST00000555634 GSG1L2A8MUP6 293 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 MINDY4BA8MYZ0 360 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 DDNO94850 711 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 SEC24BO95487 1268 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 HMGB1P09429 215 aaKnown RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 PDE4BQ07343 736 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 SPDYE2Q495Y8 402 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 RBM26Q5T8P6 1007 aaKnown RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 VPS53Q5VIR6 699 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 FKBP1CQ5VVH2 108 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 CREB3L3Q68CJ9 461 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 APOBEC3HQ6NTF7 200 aaKnown RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 MAPKAPK5Q8IW41 473 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 TDRD3Q9H7E2 651 aaKnown RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 DCP1AQ9NPI6 582 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-220ENST00000555634 TAOK2Q9UL54 1235 aa13.29□□□□□ -0.28
SHMT2-220ENST00000555634 ST18O60284 1047 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 ENTPD3O75355 529 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 NPM3O75607 178 aaKnown RBP13.28□□□□□ -0.28
SHMT2-220ENST00000555634 FGAP02671 866 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 RHBDL3P58872 404 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 PPARAQ07869 468 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 TBC1D10BQ4KMP7 808 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-220ENST00000555634 PNMA8AQ86V59 439 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-220ENST00000555634 CRACR2BQ8N4Y2 399 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-220ENST00000555634 IDI2Q9BXS1 227 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 OSBPL5Q9H0X9 879 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-220ENST00000555634 TOMM22Q9NS69 142 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 ROBO3Q96MS0 1386 aa13.28□□□□□ -0.28
SHMT2-220ENST00000555634 CLRN2A0PK11 232 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 WNT10BO00744 389 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 SLC27A2O14975 620 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 PRKAB2O43741 272 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 FGD1P98174 961 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 RABEP1Q15276 862 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 SBK1Q52WX2 424 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 MFSD6Q6ZSS7 791 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 USP50Q70EL3 339 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-220ENST00000555634 KRT23Q9C075 422 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 EPB41L4AQ9HCS5 686 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-220ENST00000555634 ZNF70Q9UC06 446 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-220ENST00000555634 SAP30BPQ9UHR5 308 aaKnown RBP13.27□□□□□ -0.29
SHMT2-220ENST00000555634 PPP2R3BQ9Y5P8 575 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 PITPNM2Q9BZ72 1349 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 SIPA1L1O43166 1804 aa13.27□□□□□ -0.29
SHMT2-220ENST00000555634 TCP10L2B9ZVM9 353 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 USP17L12C9JPN9 530 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 USP17L21D6R901 530 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 POLR2AP24928 1970 aaKnown RBP13.26□□□□□ -0.29
SHMT2-220ENST00000555634 EPHX2P34913 555 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 HAND2P61296 217 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 SART3Q15020 963 aaKnown RBP13.26□□□□□ -0.29
SHMT2-220ENST00000555634 NECTIN1Q15223 517 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 CEP350Q5VT06 3117 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 BLOC1S2Q6QNY1 142 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 SAMD7Q7Z3H4 446 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 FAM83AQ86UY5 434 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 NCOA7Q8NI08 942 aa13.26□□□□□ -0.29
SHMT2-220ENST00000555634 DCPSQ96C86 337 aaKnown RBP13.26□□□□□ -0.29
SHMT2-220ENST00000555634 PRMT6Q96LA8 375 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-220ENST00000555634 JAKMIP1Q96N16 626 aaKnown RBP13.26□□□□□ -0.29
SHMT2-220ENST00000555634 MYH4Q9Y623 1939 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 DOCK1Q14185 1865 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 ATRNL1Q5VV63 1379 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 WDHD1O75717 1129 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-220ENST00000555634 CYP21A2P08686 494 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 CASTP20810 708 aaKnown RBP13.25□□□□□ -0.29
SHMT2-220ENST00000555634 TCP10Q12799 353 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 AKNAD1Q5T1N1 836 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 CTR9Q6PD62 1173 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 SULF1Q8IWU6 871 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 ESR2Q92731 530 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 MKNK2Q9HBH9 465 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 GGA3Q9NZ52 723 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 SWAP70Q9UH65 585 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 ANAPC4Q9UJX5 808 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 CYP46A1Q9Y6A2 500 aa13.25□□□□□ -0.29
SHMT2-220ENST00000555634 ERICH2A1L162 156 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 EPS15P42566 896 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 CACNB3P54284 484 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 NBPF9Q3BBW0 867 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 EAPPQ56P03 285 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-220ENST00000555634 RRP12Q5JTH9 1297 aaKnown RBP13.24□□□□□ -0.29
SHMT2-220ENST00000555634 STAG1Q8WVM7 1258 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 FAM151AQ8WW52 585 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 CSRNP1Q96S65 589 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 EHD4Q9H223 541 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 PI4KBQ9UBF8 816 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 DAXXQ9UER7 740 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-220ENST00000555634 SERPINB13Q9UIV8 391 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 SNX14Q9Y5W7 946 aa13.24□□□□□ -0.29
SHMT2-220ENST00000555634 E7EWF7 191 aa13.23□□□□□ -0.29
SHMT2-220ENST00000555634 VEGFAP15692 232 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms