RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 SSH2Q76I76 1423 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 LRRC7Q96NW7 1537 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 ITSN1Q15811 1721 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 POLR3AO14802 1390 aaPredicted RBP8.54□□□□□ -1.04
LINC00643-203ENST00000555518 TMEM94Q12767 1356 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 J3QW42 95 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 DHX15O43143 795 aaKnown RBP8.54□□□□□ -1.04
LINC00643-203ENST00000555518 MMP20O60882 483 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 ALX3O95076 343 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 IGLV1-40P01703 118 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 SSTR4P31391 388 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 CC2D1BQ5T0F9 858 aaKnown RBP8.54□□□□□ -1.04
LINC00643-203ENST00000555518 NLRP13Q86W25 1043 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 FAM200AQ8TCP9 573 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 ARXQ96QS3 562 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 DCCP43146 1447 aa8.54□□□□□ -1.04
LINC00643-203ENST00000555518 MYBBP1AQ9BQG0 1328 aaKnown RBP8.54□□□□□ -1.04
LINC00643-203ENST00000555518 ZNF335Q9H4Z2 1342 aaPredicted RBP8.54□□□□□ -1.04
LINC00643-203ENST00000555518 NSD2O96028 1365 aa8.53□□□□□ -1.04
LINC00643-203ENST00000555518 KIAA1324LA8MWY0 1029 aaPredicted RBP8.53□□□□□ -1.04
LINC00643-203ENST00000555518 LMOD1P29536 600 aaPredicted RBP8.53□□□□□ -1.04
LINC00643-203ENST00000555518 GRIK1P39086 918 aa8.53□□□□□ -1.04
LINC00643-203ENST00000555518 INTS5Q6P9B9 1019 aaKnown RBP8.53□□□□□ -1.04
LINC00643-203ENST00000555518 KRTAP19-1Q8IUB9 90 aa8.53□□□□□ -1.04
LINC00643-203ENST00000555518 NSUN5Q96P11 429 aaKnown RBP8.53□□□□□ -1.04
LINC00643-203ENST00000555518 ANKRD26Q9UPS8 1709 aa8.53□□□□□ -1.04
LINC00643-203ENST00000555518 EDC4Q6P2E9 1401 aaKnown RBP8.53□□□□□ -1.04
LINC00643-203ENST00000555518 KIF20BQ96Q89 1820 aa8.52□□□□□ -1.04
LINC00643-203ENST00000555518 BRD4O60885 1362 aaPredicted RBP8.52□□□□□ -1.05
LINC00643-203ENST00000555518 LGR5O75473 907 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.52□□□□□ -1.05
LINC00643-203ENST00000555518 FMNL2Q96PY5 1086 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 TERF2IPQ9NYB0 399 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 LRFN2Q9ULH4 789 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 KCNMB2Q9Y691 235 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 USP6P35125 1406 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 MST1RQ04912 1400 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 CGNL1Q0VF96 1302 aa8.52□□□□□ -1.05
LINC00643-203ENST00000555518 FYB1O15117 783 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 BRD2P25440 801 aaKnown RBP8.51□□□□□ -1.05
LINC00643-203ENST00000555518 PPP2R1AP30153 589 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 CNGB1Q14028 1251 aaPredicted RBP8.51□□□□□ -1.05
LINC00643-203ENST00000555518 HDGFL2Q7Z4V5 671 aaPredicted RBP8.51□□□□□ -1.05
LINC00643-203ENST00000555518 SPACA7Q96KW9 195 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 ACEP12821 1306 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 C1orf167Q5SNV9 1468 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 LTBP4Q8N2S1 1624 aa8.51□□□□□ -1.05
LINC00643-203ENST00000555518 SWI5Q1ZZU3 235 aa8.5□□□□□ -1.05
LINC00643-203ENST00000555518 CLUAP1Q96AJ1 413 aa8.5□□□□□ -1.05
LINC00643-203ENST00000555518 C19orf44Q9H6X5 657 aa8.5□□□□□ -1.05
LINC00643-203ENST00000555518 FNDC3AQ9Y2H6 1198 aaKnown RBP8.5□□□□□ -1.05
LINC00643-203ENST00000555518 USP54Q70EL1 1684 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 MARF1Q9Y4F3 1742 aaKnown RBP8.49□□□□□ -1.05
LINC00643-203ENST00000555518 OVOS2A0A0J9YW53 1432 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 OVOS2Q6IE36 1432 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 SMNDC1O75940 238 aaKnown RBP eCLIP8.49□□□□□ -1.05
LINC00643-203ENST00000555518 YBX3P16989 372 aaKnown RBP eCLIP8.49□□□□□ -1.05
LINC00643-203ENST00000555518 CD68P34810 354 aaPredicted RBP8.49□□□□□ -1.05
LINC00643-203ENST00000555518 HYAL2Q12891 473 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 COX20Q5RI15 118 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 FAM117BQ6P1L5 589 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 PIK3R5Q8WYR1 880 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 MRS2Q9HD23 443 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 TRIM33Q9UPN9 1127 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 USP20Q9Y2K6 914 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 TTC21BQ7Z4L5 1316 aa8.49□□□□□ -1.05
LINC00643-203ENST00000555518 A6NJR5 290 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 FAM177BA6PVY3 158 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 NME9Q86XW9 330 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 KLHL23Q8NBE8 558 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 OR13H1Q8NG92 308 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 PMFBP1Q8TBY8 1022 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 PNISRQ8TF01 805 aaKnown RBP8.48□□□□□ -1.05
LINC00643-203ENST00000555518 COL26A1Q96A83 441 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 GGNBP2Q9H3C7 697 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 PIK3C2AO00443 1686 aa8.48□□□□□ -1.05
LINC00643-203ENST00000555518 KIF1AQ12756 1690 aa8.47□□□□□ -1.05
LINC00643-203ENST00000555518 COL3A1P02461 1466 aaPredicted RBP8.47□□□□□ -1.05
LINC00643-203ENST00000555518 TRPM3Q9HCF6 1732 aaPredicted RBP8.47□□□□□ -1.05
LINC00643-203ENST00000555518 GP2P55259 537 aaKnown RBP8.47□□□□□ -1.05
LINC00643-203ENST00000555518 AGGF1Q8N302 714 aaeCLIP8.47□□□□□ -1.05
LINC00643-203ENST00000555518 UBL7Q96S82 380 aaPredicted RBP8.47□□□□□ -1.05
LINC00643-203ENST00000555518 USP31Q70CQ4 1352 aa8.47□□□□□ -1.05
LINC00643-203ENST00000555518 SMG6Q86US8 1419 aaKnown RBP8.46□□□□□ -1.05
LINC00643-203ENST00000555518 CDC27P30260 824 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 NFIAQ12857 509 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 C16orf46Q6P387 395 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 ACAD11Q709F0 780 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 MORC1Q86VD1 984 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.46□□□□□ -1.06
LINC00643-203ENST00000555518 UTP4Q969X6 686 aaKnown RBP8.46□□□□□ -1.06
LINC00643-203ENST00000555518 ORAI2Q96SN7 254 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 SHPRHQ149N8 1683 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 MSH6P52701 1360 aa8.46□□□□□ -1.06
LINC00643-203ENST00000555518 UBAP1LF5GYI3 381 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 TGFB1P01137 390 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 RFX1P22670 979 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 FKBP5Q13451 457 aaPredicted RBP8.45□□□□□ -1.06
LINC00643-203ENST00000555518 RNF43Q68DV7 783 aa8.45□□□□□ -1.06
LINC00643-203ENST00000555518 ZDHHC13Q8IUH4 622 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms