RNA–Protein interactions for RNA: ENST00000555497.5

TMEM260-207, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,218 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-207ENST00000555497 FAM200AQ8TCP9 573 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 LRRC4BQ9NT99 713 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 ZKSCAN5Q9Y2L8 839 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 AFF2P51816 1311 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 RFC4P35249 363 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 MPNDQ8N594 471 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 MYH13Q9UKX3 1938 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 TRAPPC3LQ5T215 181 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 KRT40Q6A162 431 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 ANKRD2Q9GZV1 360 aa28.27■■■□□ 2.12
TMEM260-207ENST00000555497 HIBADHP31937 336 aaKnown RBP28.26■■■□□ 2.11
TMEM260-207ENST00000555497 CPLX2Q6PUV4 134 aaKnown RBP28.26■■■□□ 2.11
TMEM260-207ENST00000555497 ANAPC4Q9UJX5 808 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 TAOK2Q9UL54 1235 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 CYP2D7A0A087X1C5 515 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 SEMA3EO15041 775 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 IARSP41252 1262 aaKnown RBP28.26■■■□□ 2.11
TMEM260-207ENST00000555497 NFIXQ14938 502 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 LUZP1Q86V48 1076 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 FSIP1Q8NA03 581 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 NSUN4Q96CB9 384 aaKnown RBP28.26■■■□□ 2.11
TMEM260-207ENST00000555497 POLR3EQ9NVU0 708 aa28.26■■■□□ 2.11
TMEM260-207ENST00000555497 ONECUT3O60422 494 aaPredicted RBP28.25■■■□□ 2.11
TMEM260-207ENST00000555497 RGS22Q8NE09 1264 aa28.25■■■□□ 2.11
TMEM260-207ENST00000555497 CBX8Q9HC52 389 aa28.25■■■□□ 2.11
TMEM260-207ENST00000555497 IRS2Q9Y4H2 1338 aa28.25■■■□□ 2.11
TMEM260-207ENST00000555497 PTMAP06454 111 aaKnown RBP28.24■■■□□ 2.11
TMEM260-207ENST00000555497 PLCB2Q00722 1185 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 WTAPQ15007 396 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 SEPT12Q8IYM1 358 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 RNF41Q9H4P4 317 aaPredicted RBP28.24■■■□□ 2.11
TMEM260-207ENST00000555497 MECOMQ03112 1051 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 STK38Q15208 465 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 CCDC73Q6ZRK6 1079 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 NID2Q14112 1375 aa28.24■■■□□ 2.11
TMEM260-207ENST00000555497 MYH2Q9UKX2 1941 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 FAM160A1Q05DH4 1040 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 ADALQ6DHV7 355 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 SASS6Q6UVJ0 657 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 UBE2Q2Q8WVN8 375 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 YEATS4O95619 227 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 SLC26A6Q9BXS9 759 aa28.23■■■□□ 2.11
TMEM260-207ENST00000555497 CHAF1AQ13111 956 aaPredicted RBP28.22■■■□□ 2.11
TMEM260-207ENST00000555497 NPHP1O15259 732 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 PRDX5P30044 214 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 GUCY1A2P33402 732 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 SART3Q15020 963 aaKnown RBP28.22■■■□□ 2.11
TMEM260-207ENST00000555497 ANO1Q5XXA6 986 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 FMR1NBQ8N0W7 255 aaPredicted RBP28.22■■■□□ 2.11
TMEM260-207ENST00000555497 BRIP1Q9BX63 1249 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 JAG2Q9Y219 1238 aa28.22■■■□□ 2.11
TMEM260-207ENST00000555497 SPTLC2O15270 562 aa28.21■■■□□ 2.11
TMEM260-207ENST00000555497 FMNL1O95466 1100 aaPredicted RBP28.21■■■□□ 2.11
TMEM260-207ENST00000555497 IFNAR1P17181 557 aa28.21■■■□□ 2.11
TMEM260-207ENST00000555497 EVX2Q03828 476 aa28.21■■■□□ 2.11
TMEM260-207ENST00000555497 SSRP1Q08945 709 aaKnown RBP28.21■■■□□ 2.11
TMEM260-207ENST00000555497 SYNE3Q6ZMZ3 975 aa28.21■■■□□ 2.11
TMEM260-207ENST00000555497 DNAJC25Q9H1X3 360 aa28.21■■■□□ 2.11
TMEM260-207ENST00000555497 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP28.21■■■□□ 2.11
TMEM260-207ENST00000555497 PDS5AQ29RF7 1337 aaKnown RBP28.21■■■□□ 2.11
TMEM260-207ENST00000555497 A0A1B0GVL5 298 aa28.2■■■□□ 2.11
TMEM260-207ENST00000555497 ZNF500O60304 480 aaPredicted RBP28.2■■■□□ 2.11
TMEM260-207ENST00000555497 SEC23AQ15436 765 aa28.2■■■□□ 2.11
TMEM260-207ENST00000555497 KCNG4Q8TDN1 519 aa28.2■■■□□ 2.11
TMEM260-207ENST00000555497 MRPS27Q92552 414 aaKnown RBP28.2■■■□□ 2.11
TMEM260-207ENST00000555497 MTA3Q9BTC8 594 aa28.2■■■□□ 2.11
TMEM260-207ENST00000555497 STK36Q9NRP7 1315 aa28.2■■■□□ 2.11
TMEM260-207ENST00000555497 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP28.2■■■□□ 2.1
TMEM260-207ENST00000555497 A0A1W2PQ27 194 aa28.2■■■□□ 2.1
TMEM260-207ENST00000555497 A0A1W2PQ64 194 aa28.2■■■□□ 2.1
TMEM260-207ENST00000555497 A0A1W2PQD8 194 aa28.2■■■□□ 2.1
TMEM260-207ENST00000555497 HSPA1LP34931 641 aa28.2■■■□□ 2.1
TMEM260-207ENST00000555497 RTN1Q16799 776 aa28.2■■■□□ 2.1
TMEM260-207ENST00000555497 SF3A1Q15459 793 aaKnown RBP28.19■■■□□ 2.1
TMEM260-207ENST00000555497 CTR9Q6PD62 1173 aa28.19■■■□□ 2.1
TMEM260-207ENST00000555497 CMTR1Q8N1G2 835 aaKnown RBP28.19■■■□□ 2.1
TMEM260-207ENST00000555497 ERICH2A1L162 156 aa28.19■■■□□ 2.1
TMEM260-207ENST00000555497 NDUFA8P51970 172 aa28.19■■■□□ 2.1
TMEM260-207ENST00000555497 NBPF11Q86T75 865 aa28.19■■■□□ 2.1
TMEM260-207ENST00000555497 BCL11BQ9C0K0 894 aaPredicted RBP28.19■■■□□ 2.1
TMEM260-207ENST00000555497 CTAGE5O15320 804 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 KINO60870 393 aaKnown RBP28.18■■■□□ 2.1
TMEM260-207ENST00000555497 ZNF654Q8IZM8 581 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 ESR2Q92731 530 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 ZNF830Q96NB3 372 aaPredicted RBP28.18■■■□□ 2.1
TMEM260-207ENST00000555497 UBAC1Q9BSL1 405 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 AATFQ9NY61 560 aaKnown RBP eCLIP28.18■■■□□ 2.1
TMEM260-207ENST00000555497 DUOX1Q9NRD9 1551 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 TNKSO95271 1327 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 AXDND1Q5T1B0 1012 aaPredicted RBP28.18■■■□□ 2.1
TMEM260-207ENST00000555497 TMTC2Q8N394 836 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 CCDC82Q8N4S0 544 aa28.18■■■□□ 2.1
TMEM260-207ENST00000555497 A0A087WWV3 80 aa28.17■■■□□ 2.1
TMEM260-207ENST00000555497 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.17■■■□□ 2.1
TMEM260-207ENST00000555497 PRDM1O75626 825 aa28.17■■■□□ 2.1
TMEM260-207ENST00000555497 U2AF2P26368 475 aaKnown RBP eCLIP28.17■■■□□ 2.13e-6■■■■□ 23.8
TMEM260-207ENST00000555497 CNBD1Q8NA66 436 aa28.17■■■□□ 2.1
TMEM260-207ENST00000555497 ERCC4Q92889 916 aaPredicted RBP28.17■■■□□ 2.1
TMEM260-207ENST00000555497 USP17L12C9JPN9 530 aa28.16■■■□□ 2.1
TMEM260-207ENST00000555497 USP17L21D6R901 530 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms