RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 DNAH12Q6ZR08 3092 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 GADL1Q6ZQY3 521 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 RPTORQ8N122 1335 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 PHF20L1A8MW92 1017 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 PTPRAP18433 802 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 CDC42EP5Q6NZY7 148 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 SCYL3Q8IZE3 742 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 ANKRD13CQ8N6S4 541 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 GUCD1Q96NT3 240 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 C11orf49Q9H6J7 331 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 PICK1Q9NRD5 415 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 AFG3L2Q9Y4W6 797 aa12.18□□□□□ -0.46
SCFD1-215ENST00000555259 CACNA1FO60840 1977 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 AK9Q5TCS8 1911 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 ATRNL1Q5VV63 1379 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 HMGCRP04035 888 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 VGLL2Q8N8G2 317 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 KAZALD1Q96I82 304 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 HMX1Q9NP08 348 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-215ENST00000555259 C9orf78Q9NZ63 289 aaPredicted RBP12.17□□□□□ -0.46
SCFD1-215ENST00000555259 FAM198AQ9UFP1 575 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 DAGLAQ9Y4D2 1042 aa12.17□□□□□ -0.46
SCFD1-215ENST00000555259 DDX60LQ5H9U9 1706 aaKnown RBP12.16□□□□□ -0.46
SCFD1-215ENST00000555259 POTEB2H3BUK9 544 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 PDE8BO95263 885 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 DIXDC1Q155Q3 683 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 FAM110CQ1W6H9 321 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 LRRC24Q50LG9 513 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 METTL24Q5JXM2 366 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 ZFPM1Q8IX07 1006 aa12.16□□□□□ -0.46
SCFD1-215ENST00000555259 PFASO15067 1338 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 TRIM32Q13049 653 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 DDX10Q13206 875 aaKnown RBP12.15□□□□□ -0.46
SCFD1-215ENST00000555259 FAM109BQ6ICB4 259 aaPredicted RBP12.15□□□□□ -0.46
SCFD1-215ENST00000555259 WWC1Q8IX03 1113 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 SUCLG2Q96I99 432 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 OGDHLQ9ULD0 1010 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 AGTPBP1Q9UPW5 1226 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 PTPRFP10586 1907 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 TTC28Q96AY4 2481 aa12.15□□□□□ -0.46
SCFD1-215ENST00000555259 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 TRIM75PA6NK02 468 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 VAMP4O75379 141 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 CCDC27Q2M243 656 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 WDR66Q8TBY9 1149 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 FAM161BQ96MY7 647 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 PRDM6Q9NQX0 595 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 USP40Q9NVE5 1235 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 GJD2Q9UKL4 321 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 COL2A1P02458 1487 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-215ENST00000555259 IL16Q14005 1332 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 FANCIQ9NVI1 1328 aa12.14□□□□□ -0.47
SCFD1-215ENST00000555259 ALDH1L1O75891 902 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 MDM2Q00987 491 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-215ENST00000555259 TREML2Q5T2D2 321 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 PNMA3Q9UL41 463 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 FGFR2P21802 821 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 PRDX5P30044 214 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 PUM3Q15397 648 aaKnown RBP12.13□□□□□ -0.47
SCFD1-215ENST00000555259 TRIB2Q92519 343 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-215ENST00000555259 LRRFIP2Q9Y608 721 aaKnown RBP12.13□□□□□ -0.47
SCFD1-215ENST00000555259 DOCK2Q92608 1830 aa12.13□□□□□ -0.47
SCFD1-215ENST00000555259 PHIPQ8WWQ0 1821 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 CTNND1O60716 968 aaKnown RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 IFIT1P09914 478 aaKnown RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 NBPF7P0C2Y1 421 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 SLURP2P0DP57 97 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 COL6A1P12109 1028 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 ZEB1P37275 1124 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 RGS3P49796 1198 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 MAP3K10Q02779 954 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 RABL6Q3YEC7 729 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 MAP3K21Q5TCX8 1036 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 SLC4A10Q6U841 1118 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 SH3BP5LQ7L8J4 393 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 CCDC84Q86UT8 332 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 SRCIN1Q9C0H9 1055 aa12.12□□□□□ -0.47
SCFD1-215ENST00000555259 BICC1Q9H694 974 aaKnown RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 PRKRIP1Q9H875 184 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 SPINK5Q9NQ38 1064 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-215ENST00000555259 ENTPD3O75355 529 aa12.11□□□□□ -0.47
SCFD1-215ENST00000555259 PRKAR2AP13861 404 aaKnown RBP12.11□□□□□ -0.47
SCFD1-215ENST00000555259 GCLCP48506 637 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-215ENST00000555259 DOCK1Q14185 1865 aa12.11□□□□□ -0.47
SCFD1-215ENST00000555259 ZSCAN29Q8IWY8 852 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-215ENST00000555259 KLHDC4Q8TBB5 520 aa12.11□□□□□ -0.47
SCFD1-215ENST00000555259 IDI2Q9BXS1 227 aa12.11□□□□□ -0.47
SCFD1-215ENST00000555259 UTYO14607 1347 aa12.11□□□□□ -0.47
SCFD1-215ENST00000555259 LDHBP07195 334 aaKnown RBP12.1□□□□□ -0.47
SCFD1-215ENST00000555259 C1QBPQ07021 282 aaKnown RBP12.1□□□□□ -0.47
SCFD1-215ENST00000555259 LRRC26Q2I0M4 334 aa12.1□□□□□ -0.47
SCFD1-215ENST00000555259 PROCA1Q8NCQ7 364 aaPredicted RBP12.1□□□□□ -0.47
SCFD1-215ENST00000555259 MYH13Q9UKX3 1938 aa12.1□□□□□ -0.47
SCFD1-215ENST00000555259 RFX7Q2KHR2 1363 aa12.1□□□□□ -0.47
SCFD1-215ENST00000555259 DDTLA6NHG4 134 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-215ENST00000555259 CYP2B6P20813 491 aa12.09□□□□□ -0.47
SCFD1-215ENST00000555259 EXOSC9Q06265 439 aaKnown RBP12.09□□□□□ -0.47
SCFD1-215ENST00000555259 ZNF697Q5TEC3 545 aa12.09□□□□□ -0.47
SCFD1-215ENST00000555259 ANKRD44Q8N8A2 993 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms