RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 DLK2Q6UY11 383 aa20.61■□□□□ 0.89
SHOX-204ENST00000554971 SLF2Q8IX21 1173 aa20.61■□□□□ 0.89
SHOX-204ENST00000554971 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.61■□□□□ 0.89
SHOX-204ENST00000554971 RFX7Q2KHR2 1363 aa20.6■□□□□ 0.89
SHOX-204ENST00000554971 HIP1O00291 1037 aa20.6■□□□□ 0.89
SHOX-204ENST00000554971 DYNLL1P63167 89 aaKnown RBP20.6■□□□□ 0.89
SHOX-204ENST00000554971 RIOK1Q9BRS2 568 aaKnown RBP20.6■□□□□ 0.89
SHOX-204ENST00000554971 PUS7LQ9H0K6 701 aaKnown RBP20.6■□□□□ 0.89
SHOX-204ENST00000554971 ZNF70Q9UC06 446 aaPredicted RBP20.6■□□□□ 0.89
SHOX-204ENST00000554971 LDHCP07864 332 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 PPP4CP60510 307 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 NFIAQ12857 509 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 LMBRD1Q9NUN5 540 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 PALD1Q9ULE6 856 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 CLEC11AQ9Y240 323 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 RNF113AO15541 343 aaKnown RBP20.59■□□□□ 0.89
SHOX-204ENST00000554971 TMED8Q6PL24 325 aaPredicted RBP20.59■□□□□ 0.89
SHOX-204ENST00000554971 OSBP2Q969R2 916 aa20.59■□□□□ 0.89
SHOX-204ENST00000554971 PITPNM2Q9BZ72 1349 aa20.58■□□□□ 0.89
SHOX-204ENST00000554971 WDHD1O75717 1129 aaPredicted RBP20.58■□□□□ 0.88
SHOX-204ENST00000554971 TOMM70O94826 608 aa20.58■□□□□ 0.88
SHOX-204ENST00000554971 ZNF445P59923 1031 aa20.58■□□□□ 0.88
SHOX-204ENST00000554971 MCTP1Q6DN14 999 aa20.58■□□□□ 0.88
SHOX-204ENST00000554971 SH3RF3Q8TEJ3 882 aaPredicted RBP20.58■□□□□ 0.88
SHOX-204ENST00000554971 SEC62Q99442 399 aaKnown RBP20.58■□□□□ 0.88
SHOX-204ENST00000554971 BRD1O95696 1058 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 GLIS2Q9BZE0 524 aaPredicted RBP20.57■□□□□ 0.88
SHOX-204ENST00000554971 LSG1Q9H089 658 aaKnown RBP20.57■□□□□ 0.88
SHOX-204ENST00000554971 VEZTQ9HBM0 779 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 USP40Q9NVE5 1235 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 ZDHHC9Q9Y397 364 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 BAZ2AQ9UIF9 1905 aaKnown RBP20.57■□□□□ 0.88
SHOX-204ENST00000554971 CNTNAP1P78357 1384 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 MYO1BO43795 1136 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 FMR1Q06787 632 aaKnown RBP eCLIP20.57■□□□□ 0.88
SHOX-204ENST00000554971 ZSCAN25Q6NSZ9 544 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 CHADLQ6NUI6 762 aa20.57■□□□□ 0.88
SHOX-204ENST00000554971 DDX4Q9NQI0 724 aaKnown RBP20.57■□□□□ 0.88
SHOX-204ENST00000554971 ADM5C9JUS6 153 aa20.56■□□□□ 0.88
SHOX-204ENST00000554971 ITGBL1O95965 494 aaPredicted RBP20.56■□□□□ 0.88
SHOX-204ENST00000554971 ZFYP08048 801 aaPredicted RBP20.56■□□□□ 0.88
SHOX-204ENST00000554971 ZMYM1Q5SVZ6 1142 aa20.56■□□□□ 0.88
SHOX-204ENST00000554971 LCORLQ8N3X6 602 aa20.56■□□□□ 0.88
SHOX-204ENST00000554971 FAM227BQ96M60 508 aa20.56■□□□□ 0.88
SHOX-204ENST00000554971 FAM198AQ9UFP1 575 aa20.56■□□□□ 0.88
SHOX-204ENST00000554971 MYH1P12882 1939 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 A0A0D9SFI3 127 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 TCP10L2B9ZVM9 353 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 M0R2C6 588 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 KRT26Q7Z3Y9 468 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 CDAN1Q8IWY9 1227 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 APPBP2Q92624 585 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 KCNB2Q92953 911 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 DCPSQ96C86 337 aaKnown RBP20.55■□□□□ 0.88
SHOX-204ENST00000554971 DIAPH3Q9NSV4 1193 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 DDX60LQ5H9U9 1706 aaKnown RBP20.55■□□□□ 0.88
SHOX-204ENST00000554971 ZFPM1Q8IX07 1006 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 RBM46Q8TBY0 533 aaKnown RBP20.55■□□□□ 0.88
SHOX-204ENST00000554971 IDI2Q9BXS1 227 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 ARMT1Q9H993 441 aa20.55■□□□□ 0.88
SHOX-204ENST00000554971 TRPM7Q96QT4 1865 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 MAGEB6P1A0A0J9YX57 407 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 TRAF5O00463 557 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 MBD4O95243 580 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 BAG3O95817 575 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 MBD3O95983 291 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 FKBP1CQ5VVH2 108 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 PRAMEF18Q5VWM3 479 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 USP48Q86UV5 1035 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 TM6SF1Q9BZW5 370 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 DEFB129Q9H1M3 183 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 IL25Q9H293 177 aa20.54■□□□□ 0.88
SHOX-204ENST00000554971 NAV1Q8NEY1 1877 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 PKP1Q13835 747 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 TICAM2Q86XR7 235 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 APOBEC3FQ8IUX4 373 aaKnown RBP20.53■□□□□ 0.88
SHOX-204ENST00000554971 RTN4Q9NQC3 1192 aaKnown RBP20.53■□□□□ 0.88
SHOX-204ENST00000554971 SIPA1L1O43166 1804 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 NMIQ13287 307 aaPredicted RBP20.53■□□□□ 0.88
SHOX-204ENST00000554971 RASA3Q14644 834 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 CDC37L1Q7L3B6 337 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 SULF1Q8IWU6 871 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 TEX11Q8IYF3 940 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 TMEM39BQ9GZU3 492 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 SNX14Q9Y5W7 946 aa20.53■□□□□ 0.88
SHOX-204ENST00000554971 TCP10Q12799 353 aa20.52■□□□□ 0.88
SHOX-204ENST00000554971 LRRFIP1Q32MZ4 808 aaKnown RBP20.52■□□□□ 0.88
SHOX-204ENST00000554971 GAS2L3Q86XJ1 694 aa20.52■□□□□ 0.88
SHOX-204ENST00000554971 SMC1BQ8NDV3 1235 aa20.52■□□□□ 0.88
SHOX-204ENST00000554971 TEPSINQ96N21 525 aa20.52■□□□□ 0.88
SHOX-204ENST00000554971 SSC5DA1L4H1 1573 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 GPAA1O43292 621 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 PRKAB2O43741 272 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 PDIA4P13667 645 aaKnown RBP20.51■□□□□ 0.87
SHOX-204ENST00000554971 PICALMQ13492 652 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 CCDC129Q6ZRS4 1044 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 ZNF589Q86UQ0 364 aaPredicted RBP20.51■□□□□ 0.87
SHOX-204ENST00000554971 TGFBRAP1Q8WUH2 860 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 TTC14Q96N46 770 aa20.51■□□□□ 0.87
SHOX-204ENST00000554971 STRBPQ96SI9 672 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms