RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ZFPM1Q8IX07 1006 aa19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 CCDC8Q9H0W5 538 aaPredicted RBP19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 ZCCHC17Q9NP64 241 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 DDX4Q9NQI0 724 aaKnown RBP19.63■□□□□ 0.73
CCDC88C-209ENST00000554872 GPR25O00155 361 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 PLCG2P16885 1265 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 ZAP70P43403 619 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 PPATQ06203 517 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 PPIL2Q13356 520 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 SH3BP5LQ7L8J4 393 aa19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 CLASRPQ8N2M8 674 aaKnown RBP19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.62■□□□□ 0.73
CCDC88C-209ENST00000554872 TBC1D12O60347 775 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 TBC1D8O95759 1140 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 NAA16Q6N069 864 aaPredicted RBP19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 MIGA2Q7L4E1 593 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 CTU1Q7Z7A3 348 aaKnown RBP19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 CERS3Q8IU89 383 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 ZNF296Q8WUU4 475 aaPredicted RBP19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 CNKSR2Q8WXI2 1034 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 OTUD5Q96G74 571 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 PTPN18Q99952 460 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 MCOLN1Q9GZU1 580 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 SNRKQ9NRH2 765 aa19.61■□□□□ 0.73
CCDC88C-209ENST00000554872 PHF20L1A8MW92 1017 aa19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 BAG3O95817 575 aa19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 INPP5BP32019 993 aa19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 DGKZQ13574 1117 aa19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 BRI3BPQ8WY22 251 aa19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 ZKSCAN4Q969J2 545 aaPredicted RBP19.6■□□□□ 0.73
CCDC88C-209ENST00000554872 DDTLA6NHG4 134 aaPredicted RBP19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 CETPP11597 493 aa19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 SNAPC2Q13487 334 aa19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 PKN2Q16513 984 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 NOL10Q9BSC4 688 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 IL1RAPL2Q9NP60 686 aa19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 PIH1D3Q9NQM4 214 aaKnown RBP19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 KCNH4Q9UQ05 1017 aa19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 FOCADQ5VW36 1801 aa19.59■□□□□ 0.73
CCDC88C-209ENST00000554872 CCL15-CCL14A0A0B4J2E2 113 aa19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 IRF6O14896 467 aa19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 CCL15Q16663 113 aa19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 OSBPL5Q9H0X9 879 aaPredicted RBP19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 AK9Q5TCS8 1911 aa19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 MYO5AQ9Y4I1 1855 aaKnown RBP19.58■□□□□ 0.72
CCDC88C-209ENST00000554872 FKTNO75072 461 aa19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 CRHR2Q13324 411 aa19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 ADGRA1Q86SQ6 560 aa19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 TEX11Q8IYF3 940 aa19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 DHX36Q9H2U1 1008 aaKnown RBP19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 R3HDMLQ9H3Y0 253 aa19.57■□□□□ 0.72
CCDC88C-209ENST00000554872 CTNND1O60716 968 aaKnown RBP19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 PICALMQ13492 652 aa19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 TTF1Q15361 905 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 ZSCAN29Q8IWY8 852 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 SCYL3Q8IZE3 742 aa19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 SH3RF3Q8TEJ3 882 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 DOCK1Q14185 1865 aa19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 CDK5RAP2Q96SN8 1893 aa19.56■□□□□ 0.72
CCDC88C-209ENST00000554872 IFIT2P09913 472 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 RRP1P56182 461 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 MAP3K12Q12852 859 aa19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 METTL16Q86W50 562 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 AATFQ9NY61 560 aaKnown RBP eCLIP19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 HERC5Q9UII4 1024 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-209ENST00000554872 CXCL11O14625 94 aa19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 CAPN15O75808 1086 aa19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 IDH1O75874 414 aaKnown RBP19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 FAM43AQ8N2R8 423 aa19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 LRRCC1Q9C099 1032 aa19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.54■□□□□ 0.72
CCDC88C-209ENST00000554872 FLT1P17948 1338 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 SIPA1L1O43166 1804 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 ATP5JP18859 108 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 ANKRD23Q86SG2 305 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 ANTXR1Q9H6X2 564 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 PICK1Q9NRD5 415 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 PI4KBQ9UBF8 816 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 HTTP42858 3142 aa19.53■□□□□ 0.72
CCDC88C-209ENST00000554872 BTBD19C9JJ37 291 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 PTPRAP18433 802 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 CYP7A1P22680 504 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 MOGSQ13724 837 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 TBC1D2Q9BYX2 928 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 DCTPP1Q9H773 170 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 ZFYVE28Q9HCC9 887 aa19.52■□□□□ 0.72
CCDC88C-209ENST00000554872 PHIPQ8WWQ0 1821 aa19.51■□□□□ 0.71
CCDC88C-209ENST00000554872 TAF1CQ15572 869 aaPredicted RBP19.51■□□□□ 0.71
CCDC88C-209ENST00000554872 MAGEB6Q8N7X4 407 aa19.51■□□□□ 0.71
CCDC88C-209ENST00000554872 ERO1AQ96HE7 468 aa19.51■□□□□ 0.71
CCDC88C-209ENST00000554872 A0A0G2JLL6 359 aaPredicted RBP19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 APBB1O00213 710 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 TLR2O60603 784 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 FBXO46Q6PJ61 603 aaPredicted RBP19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 PRRT2Q7Z6L0 340 aaPredicted RBP19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 TGFBRAP1Q8WUH2 860 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 HAUS7Q99871 368 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 GINM1Q9NU53 330 aa19.5■□□□□ 0.71
CCDC88C-209ENST00000554872 AFG3L2Q9Y4W6 797 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms