RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 NSUN4Q96CB9 384 aaKnown RBP15.14■□□□□ 0.01
SHMT2-214ENST00000554604 NOL10Q9BSC4 688 aaKnown RBP15.14■□□□□ 0.01
SHMT2-214ENST00000554604 IDI2Q9BXS1 227 aa15.14■□□□□ 0.01
SHMT2-214ENST00000554604 CCDC8Q9H0W5 538 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-214ENST00000554604 BCL11AQ9H165 835 aa15.14■□□□□ 0.01
SHMT2-214ENST00000554604 MAST2Q6P0Q8 1798 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 GPR75-ASB3A0A0A6YYF3 556 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 GPR25O00155 361 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 IGF2BP3O00425 579 aaKnown RBP eCLIP15.13■□□□□ 0.01
SHMT2-214ENST00000554604 GTF2A2P52657 109 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 PICALMQ13492 652 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 ERO1BQ86YB8 467 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 ZNF296Q8WUU4 475 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-214ENST00000554604 EAF2Q96CJ1 260 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-214ENST00000554604 ZNF512BQ96KM6 892 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-214ENST00000554604 CFHR5Q9BXR6 569 aa15.13■□□□□ 0.01
SHMT2-214ENST00000554604 DBNLQ9UJU6 430 aaKnown RBP15.13■□□□□ 0.01
SHMT2-214ENST00000554604 SPDYE5A6NIY4 337 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 CCDC85CA6NKD9 419 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 APBB1O00213 710 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 ANP32AP39687 249 aaKnown RBP15.12■□□□□ 0.01
SHMT2-214ENST00000554604 NOM1Q5C9Z4 860 aaKnown RBP15.12■□□□□ 0.01
SHMT2-214ENST00000554604 NAA16Q6N069 864 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-214ENST00000554604 CTU1Q7Z7A3 348 aaKnown RBP15.12■□□□□ 0.01
SHMT2-214ENST00000554604 AACSQ86V21 672 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 ZFPM1Q8IX07 1006 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 ZNF384Q8TF68 577 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 TLR7Q9NYK1 1049 aaKnown RBP15.12■□□□□ 0.01
SHMT2-214ENST00000554604 SNCAIPQ9Y6H5 919 aa15.12■□□□□ 0.01
SHMT2-214ENST00000554604 CCL15-CCL14A0A0B4J2E2 113 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 FKTNO75072 461 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 WDHD1O75717 1129 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-214ENST00000554604 MAP4K4O95819 1239 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-214ENST00000554604 INPP5BP32019 993 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 CCL15Q16663 113 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 SMC5Q8IY18 1101 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 RHPN1Q8TCX5 695 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 MS4A4AQ96JQ5 239 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 R3HDMLQ9H3Y0 253 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 IL1RAPL2Q9NP60 686 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 CDK5RAP2Q96SN8 1893 aa15.11■□□□□ 0.01
SHMT2-214ENST00000554604 TESPA1A2RU30 521 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-214ENST00000554604 BAG3O95817 575 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 CYP2E1P05181 493 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-214ENST00000554604 ZAP70P43403 619 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 RHBDL3P58872 404 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 PPIL2Q13356 520 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 SNAPC2Q13487 334 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 C8orf34Q49A92 452 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 TEX11Q8IYF3 940 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 CLASRPQ8N2M8 674 aaKnown RBP15.1■□□□□ 0.01
SHMT2-214ENST00000554604 KIF1BPQ96EK5 621 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 PTPN18Q99952 460 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 DDX4Q9NQI0 724 aaKnown RBP15.1■□□□□ 0.01
SHMT2-214ENST00000554604 ZNF112Q9UJU3 913 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 RFX7Q2KHR2 1363 aa15.1■□□□□ 0.01
SHMT2-214ENST00000554604 DDTLA6NHG4 134 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-214ENST00000554604 IRF6O14896 467 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 CETPP11597 493 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 PLCG2P16885 1265 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 PPATQ06203 517 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 CRHR2Q13324 411 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 BRI3BPQ8WY22 251 aa15.09■□□□□ 0.01
SHMT2-214ENST00000554604 FOCADQ5VW36 1801 aa15.08■□□□□ 0.01
SHMT2-214ENST00000554604 DOCK1Q14185 1865 aa15.08■□□□□ 0.01
SHMT2-214ENST00000554604 IGSF3O75054 1194 aa15.08■□□□□ 0
SHMT2-214ENST00000554604 RAB11FIP3O75154 756 aa15.08■□□□□ 0
SHMT2-214ENST00000554604 NPM3O75607 178 aaKnown RBP15.08■□□□□ 0
SHMT2-214ENST00000554604 IDH1O75874 414 aaKnown RBP15.08■□□□□ 0
SHMT2-214ENST00000554604 IFIT2P09913 472 aaKnown RBP15.08■□□□□ 0
SHMT2-214ENST00000554604 TAF1CQ15572 869 aaPredicted RBP15.08■□□□□ 0
SHMT2-214ENST00000554604 PKN2Q16513 984 aaKnown RBP15.08■□□□□ 0
SHMT2-214ENST00000554604 SH3BP5LQ7L8J4 393 aa15.08■□□□□ 0
SHMT2-214ENST00000554604 SIRT2Q8IXJ6 389 aa15.08■□□□□ 0
SHMT2-214ENST00000554604 PICK1Q9NRD5 415 aa15.08■□□□□ 0
SHMT2-214ENST00000554604 AATFQ9NY61 560 aaKnown RBP eCLIP15.08■□□□□ 0
SHMT2-214ENST00000554604 NOL9Q5SY16 702 aaKnown RBP15.07■□□□□ 0
SHMT2-214ENST00000554604 SH3RF3Q8TEJ3 882 aaPredicted RBP15.07■□□□□ 0
SHMT2-214ENST00000554604 ZFYVE28Q9HCC9 887 aa15.07■□□□□ 0
SHMT2-214ENST00000554604 PIH1D3Q9NQM4 214 aaKnown RBP15.07■□□□□ 0
SHMT2-214ENST00000554604 MYH1P12882 1939 aa15.07■□□□□ 0
SHMT2-214ENST00000554604 ATRNL1Q5VV63 1379 aa15.07■□□□□ 0
SHMT2-214ENST00000554604 ATAD5Q96QE3 1844 aa15.06■□□□□ 0
SHMT2-214ENST00000554604 CYP7A1P22680 504 aa15.06■□□□□ 0
SHMT2-214ENST00000554604 MAP3K12Q12852 859 aa15.06■□□□□ 0
SHMT2-214ENST00000554604 FAM43AQ8N2R8 423 aa15.06■□□□□ 0
SHMT2-214ENST00000554604 OSBPL5Q9H0X9 879 aaPredicted RBP15.06■□□□□ 0
SHMT2-214ENST00000554604 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.06■□□□□ 0
SHMT2-214ENST00000554604 NDUFB9Q9Y6M9 179 aa15.06■□□□□ 0
SHMT2-214ENST00000554604 PTPRFP10586 1907 aa15.05■□□□□ 0
SHMT2-214ENST00000554604 PHF20L1A8MW92 1017 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 CTNND1O60716 968 aaKnown RBP15.05■□□□□ -0
SHMT2-214ENST00000554604 PPP4CP60510 307 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 MAP3K10Q02779 954 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 SCYL3Q8IZE3 742 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 TGFBRAP1Q8WUH2 860 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 GCC1Q96CN9 775 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 ERO1AQ96HE7 468 aa15.05■□□□□ -0
SHMT2-214ENST00000554604 IPO9Q96P70 1041 aaKnown RBP15.05■□□□□ -0
SHMT2-214ENST00000554604 COL2A1P02458 1487 aaPredicted RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms