RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SERINC3Q13530 473 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 NFE2L2Q16236 605 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 ZNF423Q2M1K9 1284 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 ZNF746Q6NUN9 644 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-209ENST00000553280 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.51□□□□□ -1.21
SCFD1-209ENST00000553280 DZIP1LQ8IYY4 767 aaKnown RBP7.51□□□□□ -1.21
SCFD1-209ENST00000553280 GATAD2BQ8WXI9 593 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 KLHDC7BQ96G42 594 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 LRRC3Q9BY71 257 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 SOX13Q9UN79 622 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 CYP8B1Q9UNU6 501 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 TBX22Q9Y458 520 aa7.51□□□□□ -1.21
SCFD1-209ENST00000553280 FAM221AA4D161 298 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 TM4SF5O14894 197 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 KLF4O43474 513 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 F13A1P00488 732 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 LMNB1P20700 586 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 NME2P22392 152 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 ZNF157P51786 506 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-209ENST00000553280 CABP4P57796 275 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 PCDH1Q08174 1060 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 BNC2Q6ZN30 1099 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-209ENST00000553280 PRR23CQ6ZRP0 262 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 ANKS3Q6ZW76 656 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 VN1R5Q7Z5H4 357 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 KLHL23Q8NBE8 558 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 CPLX3Q8WVH0 158 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 SLC7A3Q8WY07 619 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 MIR1-1HGQ9H1L0 117 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 SIRPGQ9P1W8 387 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 CDK11AQ9UQ88 783 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-209ENST00000553280 PCDHB5Q9Y5E4 795 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 MRVI1Q9Y6F6 885 aa7.5□□□□□ -1.21
SCFD1-209ENST00000553280 H3BRJ5 948 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 ADAM11O75078 769 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 BMS1Q14692 1282 aaKnown RBP7.49□□□□□ -1.21
SCFD1-209ENST00000553280 LRRC14Q15048 493 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 DUOXA2Q1HG44 320 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 SEZ6Q53EL9 994 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 HGSNATQ68CP4 663 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 UBASH3BQ8TF42 649 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 SRRTQ9BXP5 876 aaKnown RBP7.49□□□□□ -1.21
SCFD1-209ENST00000553280 PRKAG3Q9UGI9 489 aa7.49□□□□□ -1.21
SCFD1-209ENST00000553280 ARNTP27540 789 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 NLRP12P59046 1061 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 RAB33AQ14088 237 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 MPP2Q14168 576 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 RASIP1Q5U651 963 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 SCARA3Q6AZY7 606 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 SDE2Q6IQ49 451 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 FBXO27Q8NI29 283 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 JARID2Q92833 1246 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-209ENST00000553280 MRFAP1L1Q96HT8 127 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 SHDQ96IW2 340 aa7.48□□□□□ -1.21
SCFD1-209ENST00000553280 UBL7Q96S82 380 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-209ENST00000553280 CILPO75339 1184 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 NCLP19338 710 aaKnown RBP7.47□□□□□ -1.21
SCFD1-209ENST00000553280 PIP4K2BP78356 416 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 CWF19L2Q2TBE0 894 aaKnown RBP7.47□□□□□ -1.21
SCFD1-209ENST00000553280 DIEXFQ68CQ4 756 aaKnown RBP7.47□□□□□ -1.21
SCFD1-209ENST00000553280 Q6ZS46 218 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 KIAA1211Q6ZU35 1233 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 REXO1Q8N1G1 1221 aaKnown RBP7.47□□□□□ -1.21
SCFD1-209ENST00000553280 ANAPC16Q96DE5 110 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 EMILIN2Q9BXX0 1053 aa7.47□□□□□ -1.21
SCFD1-209ENST00000553280 TLR3O15455 904 aaKnown RBP7.46□□□□□ -1.22
SCFD1-209ENST00000553280 ESRRAP11474 423 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-209ENST00000553280 ZNF165P49910 485 aa7.46□□□□□ -1.22
SCFD1-209ENST00000553280 LLGL2Q6P1M3 1020 aa7.46□□□□□ -1.22
SCFD1-209ENST00000553280 SULF2Q8IWU5 870 aa7.46□□□□□ -1.22
SCFD1-209ENST00000553280 STK35Q8TDR2 534 aa7.46□□□□□ -1.22
SCFD1-209ENST00000553280 PPT2Q9UMR5 302 aa7.46□□□□□ -1.22
SCFD1-209ENST00000553280 ANKRD62A6NC57 917 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 MCM4P33991 863 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 GIPRP48546 466 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 EIF6P56537 245 aaKnown RBP7.45□□□□□ -1.22
SCFD1-209ENST00000553280 ZNF252P-AS1Q0IIN9 211 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 TNNI3KQ59H18 835 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 EGFLAMQ63HQ2 1017 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 LRP10Q7Z4F1 713 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 NLGN1Q8N2Q7 840 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 GRIN3AQ8TCU5 1115 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 DDX54Q8TDD1 881 aaKnown RBP7.45□□□□□ -1.22
SCFD1-209ENST00000553280 TRIM55Q9BYV6 548 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 OSGEPQ9NPF4 335 aa7.45□□□□□ -1.22
SCFD1-209ENST00000553280 SOX1O00570 391 aaPredicted RBP7.44□□□□□ -1.22
SCFD1-209ENST00000553280 U2SURPO15042 1029 aaKnown RBP7.44□□□□□ -1.22
SCFD1-209ENST00000553280 ARL4DP49703 201 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 C19orf57Q0VDD7 668 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 SEPT6Q14141 434 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 IKBKEQ14164 716 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 CCDC81Q6ZN84 652 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 ZNF662Q6ZS27 426 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 REC114Q7Z4M0 266 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 JAZF1Q86VZ6 243 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 ARMC10Q8N2F6 343 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 HNRNPLLQ8WVV9 542 aaKnown RBP7.44□□□□□ -1.22
SCFD1-209ENST00000553280 WNT8BQ93098 351 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 CRBNQ96SW2 442 aa7.44□□□□□ -1.22
SCFD1-209ENST00000553280 CEP41Q9BYV8 373 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms