RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PRDX5P30044 214 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 RBM5P52756 815 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 DLGAP5Q15398 846 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 HSP90AB4PQ58FF6 505 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 PLEKHM2Q8IWE5 1019 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 OTUD7AQ8TE49 926 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 ZNF408Q9H9D4 720 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 USP25Q9UHP3 1055 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 ARAP2Q8WZ64 1704 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 CLRN2A0PK11 232 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 SPDYE2BA6NHP3 402 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 CELF2O95319 508 aaKnown RBP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 ADCY5O95622 1261 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 SPDYE6P0CI01 402 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 IRX5P78411 483 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 RHPN1Q8TCX5 695 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 TBC1D22AQ8WUA7 517 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 CHAMP1Q96JM3 812 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 GPR108Q9NPR9 543 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 CREBZFQ9NS37 354 aa9.02□□□□□ -0.97
LIMA1-216ENST00000552909 GNL3LQ9NVN8 582 aaKnown RBP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 DBNLQ9UJU6 430 aaKnown RBP9.02□□□□□ -0.97
LIMA1-216ENST00000552909 TRPM7Q96QT4 1865 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 MCAMP43121 646 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 CRKP46108 304 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 SLC20A2Q08357 652 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 GORABQ5T7V8 394 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 SULF1Q8IWU6 871 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 PLCD3Q8N3E9 789 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 MTMR14Q8NCE2 650 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 WDR66Q8TBY9 1149 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 USP26Q9BXU7 913 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 HMG20BQ9P0W2 317 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 MKRN1Q9UHC7 482 aaKnown RBP9.01□□□□□ -0.97
LIMA1-216ENST00000552909 DENND2AQ9ULE3 1009 aa9.01□□□□□ -0.97
LIMA1-216ENST00000552909 TPM3P06753 285 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 DIXDC1Q155Q3 683 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 KIF1BPQ96EK5 621 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 DNAJC2Q99543 621 aaKnown RBP9□□□□□ -0.97
LIMA1-216ENST00000552909 TDRD3Q9H7E2 651 aaKnown RBP9□□□□□ -0.97
LIMA1-216ENST00000552909 SNRKQ9NRH2 765 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 SERPINA10Q9UK55 444 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 ARID4AP29374 1257 aaPredicted RBP9□□□□□ -0.97
LIMA1-216ENST00000552909 MMP14P50281 582 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 SYCP1Q15431 976 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 FOXD4L5Q5VV16 416 aaPredicted RBP9□□□□□ -0.97
LIMA1-216ENST00000552909 AACSQ86V21 672 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 KIAA1524Q8TCG1 905 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 FOXD4L4Q8WXT5 416 aaPredicted RBP9□□□□□ -0.97
LIMA1-216ENST00000552909 ABCF2Q9UG63 623 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 NDUFB9Q9Y6M9 179 aa9□□□□□ -0.97
LIMA1-216ENST00000552909 SEMA3EO15041 775 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 SLFN14P0C7P3 912 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 GSPT1P15170 499 aaKnown RBP8.99□□□□□ -0.97
LIMA1-216ENST00000552909 CACNB3P54284 484 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 NCBP1Q09161 790 aaKnown RBP8.99□□□□□ -0.97
LIMA1-216ENST00000552909 APOBEC3HQ6NTF7 200 aaKnown RBP8.99□□□□□ -0.97
LIMA1-216ENST00000552909 SPATA5Q8NB90 893 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 ZNF384Q8TF68 577 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 KLRG1Q96E93 195 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 CDCA5Q96FF9 252 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 TIGD1Q96MW7 591 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 VEZTQ9HBM0 779 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 CTNNA3Q9UI47 895 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 ABT1Q9ULW3 272 aaKnown RBP8.99□□□□□ -0.97
LIMA1-216ENST00000552909 AKAP11Q9UKA4 1901 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 PITPNM2Q9BZ72 1349 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 BRD1O95696 1058 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 LDHBP07195 334 aaKnown RBP8.99□□□□□ -0.97
LIMA1-216ENST00000552909 MOB2Q70IA6 237 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 SAPCD2Q86UD0 394 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 ERC1Q8IUD2 1116 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 TEKT1Q969V4 418 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 DEFB129Q9H1M3 183 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 FZD1Q9UP38 647 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 SUGT1Q9Y2Z0 365 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 SALL1Q9NSC2 1324 aa8.99□□□□□ -0.97
LIMA1-216ENST00000552909 MYO5AQ9Y4I1 1855 aaKnown RBP8.98□□□□□ -0.97
LIMA1-216ENST00000552909 PDE1AP54750 535 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 HDLBPQ00341 1268 aaKnown RBP8.98□□□□□ -0.97
LIMA1-216ENST00000552909 CCDC158Q5M9N0 1113 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 TTC39AQ5SRH9 613 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 TSHZ3Q63HK5 1081 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 CASC1Q6TDU7 716 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 CDAN1Q8IWY9 1227 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 CLASRPQ8N2M8 674 aaKnown RBP8.98□□□□□ -0.97
LIMA1-216ENST00000552909 ZDHHC15Q96MV8 337 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 ZNF70Q9UC06 446 aaPredicted RBP8.98□□□□□ -0.97
LIMA1-216ENST00000552909 DDX41Q9UJV9 622 aaKnown RBP8.98□□□□□ -0.97
LIMA1-216ENST00000552909 ECM29Q5VYK3 1845 aa8.98□□□□□ -0.97
LIMA1-216ENST00000552909 MYO1BO43795 1136 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 KDM4AO75164 1064 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 MX1P20591 662 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 ZAP70P43403 619 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 VEGFBP49765 207 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 TERF2Q15554 542 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 DEFB115Q30KQ5 88 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 SPDYE2Q495Y8 402 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 MRIQ9BWK5 157 aa8.97□□□□□ -0.97
LIMA1-216ENST00000552909 DAGLAQ9Y4D2 1042 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms