RNA–Protein interactions for RNA: ENST00000550692.1

BRF1-218, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 4

Gene BRF1, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-218	ENST00000550692	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
BRF1-218	ENST00000550692	DDTL	A6NHG4	134 aa	Predicted RBP	13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	IDH1	O75874	414 aa	Known RBP	13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	SLURP2	P0DP57	97 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	ZBTB48	P10074	688 aa	Predicted RBP	13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	OPTN	Q96CV9	577 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	WRNIP1	Q96S55	665 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	ZNF341	Q9BYN7	854 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	LRRCC1	Q9C099	1032 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	SAGE1	Q9NXZ1	904 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	CSAD	Q9Y600	493 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	SNCAIP	Q9Y6H5	919 aa		13.71	□□□□□ -0.21
BRF1-218	ENST00000550692	IGSF3	O75054	1194 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	CYP7A1	P22680	504 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	INPP5B	P32019	993 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	SREBF2	Q12772	1141 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	MAGEB6	Q8N7X4	407 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	NOL10	Q9BSC4	688 aa	Known RBP	13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	CASP8AP2	Q9UKL3	1982 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	MAST2	Q6P0Q8	1798 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	ATRNL1	Q5VV63	1379 aa		13.7	□□□□□ -0.22
BRF1-218	ENST00000550692	MANSC4	A6NHS7	340 aa	Predicted RBP	13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	NPM3	O75607	178 aa	Known RBP	13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	BAG3	O95817	575 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	MAP4K4	O95819	1239 aa	Predicted RBP	13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	PPP4C	P60510	307 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	TEX11	Q8IYF3	940 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	EDC3	Q96F86	508 aa	Known RBP	13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	ABHD8	Q96I13	439 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	DNAJC2	Q99543	621 aa	Known RBP	13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	BOLA2	Q9H3K6	86 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	ZNF112	Q9UJU3	913 aa		13.69	□□□□□ -0.22
BRF1-218	ENST00000550692	SPDYE5	A6NIY4	337 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	GOLIM4	O00461	696 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	TBC1D8	O95759	1140 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	ATP5J	P18859	108 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	INHBE	P58166	350 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	DYNLL1	P63167	89 aa	Known RBP	13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	MAP3K12	Q12852	859 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	OTUD5	Q96G74	571 aa		13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	RWDD1	Q9H446	243 aa	Predicted RBP	13.68	□□□□□ -0.22
BRF1-218	ENST00000550692	DOCK2	Q92608	1830 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	PHF20L1	A8MW92	1017 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	PLCG2	P16885	1265 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	MAP3K10	Q02779	954 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	TTF1	Q15361	905 aa	Predicted RBP	13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	ERO1B	Q86YB8	467 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	IFNL1	Q8IU54	200 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	MIGA1	Q8NAN2	632 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	TGFBRAP1	Q8WUH2	860 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	MS4A4A	Q96JQ5	239 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	PTPN18	Q99952	460 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	R3HDML	Q9H3Y0	253 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	PPP4R2	Q9NY27	417 aa		13.67	□□□□□ -0.22
BRF1-218	ENST00000550692	TESPA1	A2RU30	521 aa	Predicted RBP	13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	HDAC1	Q13547	482 aa	Predicted RBP	13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	MAPKAPK5	Q8IW41	473 aa		13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	HAUS7	Q99871	368 aa		13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	PAG1	Q9NWQ8	432 aa		13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	LAMB1	P07942	1786 aa		13.66	□□□□□ -0.22
BRF1-218	ENST00000550692	FAM196B	A6NMK8	535 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	IRF6	O14896	467 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	PDE6A	P16499	860 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	GTF2A2	P52657	109 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	NOL9	Q5SY16	702 aa	Known RBP	13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	SLC9C2	Q5TAH2	1124 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	BRI3BP	Q8WY22	251 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	ECHDC1	Q9NTX5	307 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	CDK5RAP2	Q96SN8	1893 aa		13.65	□□□□□ -0.22
BRF1-218	ENST00000550692	FLT1	P17948	1338 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	COL2A1	P02458	1487 aa	Predicted RBP	13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	CCL15-CCL14	A0A0B4J2E2	113 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	TBC1D12	O60347	775 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	ALDH1A1	P00352	501 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	PPAT	Q06203	517 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	PPIL2	Q13356	520 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	CCL15	Q16663	113 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	SLFNL1	Q499Z3	407 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	TSHZ3	Q63HK5	1081 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	TMED8	Q6PL24	325 aa	Predicted RBP	13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	RIOK1	Q9BRS2	568 aa	Known RBP	13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	CFHR5	Q9BXR6	569 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	ZNF532	Q9HCE3	1301 aa		13.64	□□□□□ -0.23
BRF1-218	ENST00000550692	TCRBV5S4A2T	A0A5A2	114 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	GPR25	O00155	361 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	CHGB	P05060	677 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	OTUD7B	Q6GQQ9	843 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	SCYL3	Q8IZE3	742 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	FAM43A	Q8N2R8	423 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	CCDC136	Q96JN2	1154 aa		13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	DHX36	Q9H2U1	1008 aa	Known RBP	13.63	□□□□□ -0.23
BRF1-218	ENST00000550692	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.63	□□□□□ -0.23	3e-6	■□□□□ 9.8
BRF1-218	ENST00000550692	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.63	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms