RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SPATA31A3Q5VYP0 1347 aa18.52■□□□□ 0.55
CUX1-213ENST00000549414 POLR3GO15318 223 aaPredicted RBP18.52■□□□□ 0.55
CUX1-213ENST00000549414 ZNF75DP51815 510 aa18.52■□□□□ 0.55
CUX1-213ENST00000549414 CHRNDQ07001 517 aa18.52■□□□□ 0.55
CUX1-213ENST00000549414 KARSQ15046 597 aaKnown RBP18.52■□□□□ 0.55
CUX1-213ENST00000549414 NLRP10Q86W26 655 aa18.52■□□□□ 0.55
CUX1-213ENST00000549414 PUS7LQ9H0K6 701 aaKnown RBP18.52■□□□□ 0.55
CUX1-213ENST00000549414 IQSEC2Q5JU85 1478 aa18.52■□□□□ 0.55
CUX1-213ENST00000549414 HLFQ16534 295 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.51■□□□□ 0.554e-6■■■■□ 23.2
CUX1-213ENST00000549414 UIMC1Q96RL1 719 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 PAXBP1Q9Y5B6 917 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 CDC42BPGQ6DT37 1551 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 DTHD1Q6ZMT9 781 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 ZNF654Q8IZM8 581 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 PYM1Q9BRP8 204 aaKnown RBP18.51■□□□□ 0.55
CUX1-213ENST00000549414 C6orf50Q9HD87 102 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 NBPF14Q5TI25 921 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 IQUBQ8NA54 791 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 RMND1Q9NWS8 449 aa18.51■□□□□ 0.55
CUX1-213ENST00000549414 PPARAQ07869 468 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 ADGRL3Q9HAR2 1447 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 NRXN1Q9ULB1 1477 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 PSMA7O14818 248 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 CCT6AP40227 531 aaKnown RBP18.5■□□□□ 0.55
CUX1-213ENST00000549414 SYT10Q6XYQ8 523 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 RRP36Q96EU6 259 aaKnown RBP18.5■□□□□ 0.55
CUX1-213ENST00000549414 GPCPD1Q9NPB8 672 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 MTX1Q13505 466 aa18.5■□□□□ 0.55
CUX1-213ENST00000549414 ADAMTS13Q76LX8 1427 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 APBA3O96018 575 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 LZTFL1Q9NQ48 299 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 BTBD18B2RXH4 712 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 JAKMIP3Q5VZ66 844 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 TFAP4Q01664 338 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 TRMT44Q8IYL2 757 aaKnown RBP18.49■□□□□ 0.55
CUX1-213ENST00000549414 NSUN7Q8NE18 718 aaKnown RBP18.49■□□□□ 0.55
CUX1-213ENST00000549414 TGFBRAP1Q8WUH2 860 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 H7C1W4 665 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 PPP1R12BO60237 982 aaPredicted RBP18.49■□□□□ 0.55
CUX1-213ENST00000549414 USPL1Q5W0Q7 1092 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 TAF4BQ92750 862 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 RBM28Q9NW13 759 aaKnown RBP18.49■□□□□ 0.55
CUX1-213ENST00000549414 CLEC11AQ9Y240 323 aa18.49■□□□□ 0.55
CUX1-213ENST00000549414 OVOS2A0A0J9YW53 1432 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 OVOS2Q6IE36 1432 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 PRKAB2O43741 272 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 MYO1BO43795 1136 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 AKR1B10O60218 316 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 FGFR1OPO95684 399 aaKnown RBP18.48■□□□□ 0.55
CUX1-213ENST00000549414 LRMPQ12912 555 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 CIAO1O76071 339 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 TSC1Q92574 1164 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 DRC1Q96MC2 740 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 CLIC6Q96NY7 704 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 MMRN2Q9H8L6 949 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 CGNQ9P2M7 1197 aaKnown RBP18.48■□□□□ 0.55
CUX1-213ENST00000549414 PCDHA7Q9UN72 937 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 EIF3JO75822 258 aaKnown RBP18.48■□□□□ 0.55
CUX1-213ENST00000549414 CHGBP05060 677 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 MATR3P43243 847 aaKnown RBP eCLIP18.48■□□□□ 0.555e-7■■■■□ 22.9
CUX1-213ENST00000549414 PNOCQ13519 176 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 CLIC4Q9Y696 253 aa18.48■□□□□ 0.55
CUX1-213ENST00000549414 PFKFB1P16118 471 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 PLCG2P16885 1265 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 IL6STP40189 918 aaPredicted RBP18.47■□□□□ 0.55
CUX1-213ENST00000549414 FANCCQ00597 558 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 GPR108Q9NPR9 543 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 SAMM50Q9Y512 469 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 TNKSO95271 1327 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 CUTAO60888 179 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 PARP1P09874 1014 aaKnown RBP18.47■□□□□ 0.55
CUX1-213ENST00000549414 POLD1P28340 1107 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 TTC38Q5R3I4 469 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 TXLNBQ8N3L3 684 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 FBXO18Q8NFZ0 1043 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 JDP2Q8WYK2 163 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 PPP1R9BQ96SB3 815 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 GGA1Q9UJY5 639 aa18.47■□□□□ 0.55
CUX1-213ENST00000549414 ZC3H13Q5T200 1668 aaKnown RBP18.46■□□□□ 0.55
CUX1-213ENST00000549414 USO1O60763 962 aaKnown RBP18.46■□□□□ 0.55
CUX1-213ENST00000549414 SPAG1Q07617 926 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 ADALQ6DHV7 355 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 TTLL11Q8NHH1 800 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 GJB4Q9NTQ9 266 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 NBPF26B4DH59 902 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 ZNF827Q17R98 1081 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 TAF3Q5VWG9 929 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 MSL1Q68DK7 614 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 NBPF10Q6P3W6 841 aaKnown RBP18.46■□□□□ 0.55
CUX1-213ENST00000549414 NBPF15Q8N660 670 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 CTAGE1Q96RT6 745 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 VPS16Q9H269 839 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 ZDHHC9Q9Y397 364 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 NFE2L3Q9Y4A8 694 aa18.46■□□□□ 0.55
CUX1-213ENST00000549414 LEKR1Q6ZMV7 388 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 AIFM3Q96NN9 605 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 JADE2Q9NQC1 790 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 GOLGA6L9A6NEM1 432 aa18.45■□□□□ 0.54
CUX1-213ENST00000549414 GNA11P29992 359 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms