RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 IFIT1BQ5T764 474 aaKnown RBP9.82□□□□□ -0.84
CLIP1-218ENST00000545889 CNKSR1Q969H4 720 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 FAM227BQ96M60 508 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 GINS2Q9Y248 185 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 MAST3O60307 1309 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 ZAP70P43403 619 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 CCT2P78371 535 aaKnown RBP9.82□□□□□ -0.84
CLIP1-218ENST00000545889 TNFAIP1Q13829 316 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 NOLC1Q14978 699 aaKnown RBP eCLIP9.82□□□□□ -0.84
CLIP1-218ENST00000545889 RGS22Q8NE09 1264 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 RSPH14Q9UHP6 348 aa9.82□□□□□ -0.84
CLIP1-218ENST00000545889 DBNLQ9UJU6 430 aaKnown RBP9.82□□□□□ -0.84
CLIP1-218ENST00000545889 PPFIA3O75145 1194 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 FGFR1OPO95684 399 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 C10orf67Q8IYJ2 551 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 DCPSQ96C86 337 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 RBM27Q9P2N5 1060 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 PHACTR2O75167 634 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 HIBADHP31937 336 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 BCAMP50895 628 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 AMPD3Q01432 767 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 CHRNDQ07001 517 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 INTS5Q6P9B9 1019 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 CACNA2D4Q7Z3S7 1137 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC83Q8IWF9 413 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 TMTC2Q8N394 836 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 KRT23Q9C075 422 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 NOP2P46087 812 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 MAGEB6Q8N7X4 407 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 LPIN2Q92539 896 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 TTC12Q9H892 705 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 BCL2L12Q9HB09 334 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 TOPAZ1Q8N9V7 1692 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 EPB41L2O43491 1005 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 NFIXQ14938 502 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 ZYXQ15942 572 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 ENOX2Q16206 610 aaKnown RBP9.81□□□□□ -0.84
CLIP1-218ENST00000545889 FKBP15Q5T1M5 1219 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 PI16Q6UXB8 463 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 C2CD5Q86YS7 1000 aa9.81□□□□□ -0.84
CLIP1-218ENST00000545889 ZNF500O60304 480 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 CLEC4GQ6UXB4 293 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC117Q8IWD4 279 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC148Q8NFR7 591 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 LRRC2Q9BYS8 371 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 TNS2Q63HR2 1409 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 LOC102724159A0A0B4J2E5 919 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 CAMTA2O94983 1202 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ZBTB7AO95365 584 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC192P0DO97 292 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 METAP2P50579 478 aaKnown RBP eCLIP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 POLA2Q14181 598 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 PWP2Q15269 919 aaKnown RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 USP37Q86T82 979 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ZNF354CQ86Y25 554 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 PPP1R9BQ96SB3 815 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ARGLU1Q9NWB6 273 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 SLC5A4Q9NY91 659 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 OGFRQ9NZT2 677 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 RBM8AQ9Y5S9 174 aaKnown RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 PHKA1P46020 1223 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 HS1BP3Q53T59 392 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 HEATR3Q7Z4Q2 680 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 RAB11FIP4Q86YS3 637 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 TAF4BQ92750 862 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 SLC26A6Q9BXS9 759 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ARHGEF10LQ9HCE6 1279 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ORC3Q9UBD5 711 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 ABT1Q9ULW3 272 aaKnown RBP9.8□□□□□ -0.84
CLIP1-218ENST00000545889 BCL9O00512 1426 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 PHLPP1O60346 1717 aa9.8□□□□□ -0.84
CLIP1-218ENST00000545889 KIF4AO95239 1232 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 PDE8BO95263 885 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 NAPAP54920 295 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 EZH2Q15910 746 aaKnown RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 ZSCAN23Q3MJ62 389 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 MCMDC2Q4G0Z9 681 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 ZNF397Q8NF99 534 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 RBSNQ9H1K0 784 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 ANTXR1Q9H6X2 564 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CNNM2Q9H8M5 875 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 PABPN1LA6NDY0 278 aaKnown RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 FBXO41Q8TF61 875 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 GPR101Q96P66 508 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 DENND2AQ9ULE3 1009 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 STRCQ7RTU9 1775 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 K7ELQ4 463 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CTNNA2P26232 953 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 POLR3GO15318 223 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CALM1P0DP23 149 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CALM2P0DP24 149 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CALM3P0DP25 149 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 SLC27A3Q5K4L6 730 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 CCDC112Q8NEF3 446 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 SEC62Q99442 399 aaKnown RBP9.79□□□□□ -0.84
CLIP1-218ENST00000545889 PSMD1Q99460 953 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 TSPY26PQ9H489 355 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 MROH5Q6ZUA9 1318 aa9.79□□□□□ -0.84
CLIP1-218ENST00000545889 RNF113AO15541 343 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms