RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PPP6R2O75170 966 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 PDE4BQ07343 736 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 TRIM29Q14134 588 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 IFNL3Q8IZI9 196 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 FEZ1Q99689 392 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 OGFRQ9NZT2 677 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 PCDHA5Q9Y5H7 936 aa18.23■□□□□ 0.51
LDLR-204ENST00000545707 AKAP11Q9UKA4 1901 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 CFAP100Q494V2 611 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 RESP18Q5W5W9 173 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 TEX13AQ9BXU3 409 aaPredicted RBP18.22■□□□□ 0.51
LDLR-204ENST00000545707 NAPBQ9H115 298 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 FANCLQ9NW38 375 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 SLC12A7Q9Y666 1083 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 MYO5AQ9Y4I1 1855 aaKnown RBP18.22■□□□□ 0.51
LDLR-204ENST00000545707 C4AP0C0L4 1744 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 C4BP0C0L5 1744 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 IKBKBO14920 756 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 SLU7O95391 586 aaKnown RBP18.22■□□□□ 0.51
LDLR-204ENST00000545707 ATP2B1P20020 1258 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 BMP6P22004 513 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 FBXO38Q6PIJ6 1188 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 CNNM3Q8NE01 707 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 TMEM87BQ96K49 555 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 TIGD1Q96MW7 591 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 DDX41Q9UJV9 622 aaKnown RBP18.22■□□□□ 0.51
LDLR-204ENST00000545707 KCNH3Q9ULD8 1083 aa18.22■□□□□ 0.51
LDLR-204ENST00000545707 PAPPAQ13219 1627 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 CYP19A1P11511 503 aaPredicted RBP18.21■□□□□ 0.51
LDLR-204ENST00000545707 ARID4AP29374 1257 aaPredicted RBP18.21■□□□□ 0.51
LDLR-204ENST00000545707 MYL5Q02045 173 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 RASGRF1Q13972 1273 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 JMYQ8N9B5 988 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 SPATA5Q8NB90 893 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 ZNF512BQ96KM6 892 aaPredicted RBP18.21■□□□□ 0.51
LDLR-204ENST00000545707 KCND1Q9NSA2 647 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 PATL2C9JE40 543 aaKnown RBP18.21■□□□□ 0.51
LDLR-204ENST00000545707 SSRP1Q08945 709 aaKnown RBP18.21■□□□□ 0.51
LDLR-204ENST00000545707 HOMER1Q86YM7 354 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 ERO1AQ96HE7 468 aa18.21■□□□□ 0.51
LDLR-204ENST00000545707 KAT6BQ8WYB5 2073 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 PDE8AO60658 829 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 TOB1P50616 345 aaPredicted RBP18.2■□□□□ 0.5
LDLR-204ENST00000545707 ERCC6LQ2NKX8 1250 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 KRBA2Q6ZNG9 492 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 SEC31BQ9NQW1 1179 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 ZNF827Q17R98 1081 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 SGMS1Q86VZ5 419 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 GRAMD1CQ8IYS0 662 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 LPIN2Q92539 896 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 SLAIN2Q9P270 581 aa18.2■□□□□ 0.5
LDLR-204ENST00000545707 GSG1L2A8MUP6 293 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 SMIM22K7EJ46 135 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 NR5A1Q13285 461 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 PUM3Q15397 648 aaKnown RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 UTP14CQ5TAP6 766 aaKnown RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 MIGA1Q8NAN2 632 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 UTP14AQ9BVJ6 771 aaKnown RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 TOGARAM1Q9Y4F4 1720 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 SOS2Q07890 1332 aaPredicted RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 ATRNO75882 1429 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 CUTAO60888 179 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 DZIP3Q86Y13 1208 aaKnown RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 NOSTRINQ8IVI9 506 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 DIS3L2Q8IYB7 885 aaKnown RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 LCORLQ8N3X6 602 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 PDILTQ8N807 584 aa18.19■□□□□ 0.5
LDLR-204ENST00000545707 ZNF397Q8NF99 534 aaPredicted RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 IQSEC3Q9UPP2 1182 aaPredicted RBP18.19■□□□□ 0.5
LDLR-204ENST00000545707 PSDA5PKW4 1024 aaPredicted RBP18.18■□□□□ 0.5
LDLR-204ENST00000545707 UQCRFS1P1P0C7P4 283 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 PRR29P0C7W0 189 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 FGFR2P21802 821 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 BCAMP50895 628 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 OLFM4Q6UX06 510 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.18■□□□□ 0.5
LDLR-204ENST00000545707 DNAI1Q9UI46 699 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 AKNAD1Q5T1N1 836 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 MFSD6Q6ZSS7 791 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 FAM177A1Q8N128 213 aaPredicted RBP18.18■□□□□ 0.5
LDLR-204ENST00000545707 KRI1Q8N9T8 703 aaKnown RBP18.18■□□□□ 0.5
LDLR-204ENST00000545707 INTS13Q9NVM9 706 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 SHANK3Q9BYB0 1731 aa18.18■□□□□ 0.5
LDLR-204ENST00000545707 MYH7P12883 1935 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 A0A0G2JS52 829 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 FANCGO15287 622 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 POLR2DO15514 142 aaKnown RBP18.17■□□□□ 0.5
LDLR-204ENST00000545707 FMNL1O95466 1100 aaPredicted RBP18.17■□□□□ 0.5
LDLR-204ENST00000545707 LIFRP42702 1097 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 TDO2P48775 406 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 MAP3K12Q12852 859 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 TRMT44Q8IYL2 757 aaKnown RBP18.17■□□□□ 0.5
LDLR-204ENST00000545707 OXER1Q8TDS5 423 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 NUP133Q8WUM0 1156 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 GTPBP4Q9BZE4 634 aaKnown RBP18.17■□□□□ 0.5
LDLR-204ENST00000545707 BTG4Q9NY30 223 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 PCDHB6Q9Y5E3 794 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 DDX60Q8IY21 1712 aaKnown RBP18.17■□□□□ 0.5
LDLR-204ENST00000545707 FAM237AA0A1B0GTK4 181 aa18.17■□□□□ 0.5
LDLR-204ENST00000545707 KIF2AO00139 706 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms