RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 AIFM3Q96NN9 605 aa16.19■□□□□ 0.18
MSH2-206ENST00000543555 BCL2L12Q9HB09 334 aa16.19■□□□□ 0.18
MSH2-206ENST00000543555 RTCBQ9Y3I0 505 aaKnown RBP16.19■□□□□ 0.18
MSH2-206ENST00000543555 CYP7A1P22680 504 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 SLC10A5Q5PT55 438 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 PHKBQ93100 1093 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 TTC12Q9H892 705 aaPredicted RBP16.18■□□□□ 0.18
MSH2-206ENST00000543555 FAM217BQ9NTX9 383 aaPredicted RBP16.18■□□□□ 0.18
MSH2-206ENST00000543555 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.18■□□□□ 0.18
MSH2-206ENST00000543555 SF3A1Q15459 793 aaKnown RBP16.18■□□□□ 0.18
MSH2-206ENST00000543555 SYNE3Q6ZMZ3 975 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 CCDC144CPQ8IYA2 1237 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 MINPP1Q9UNW1 487 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 SLC12A7Q9Y666 1083 aa16.18■□□□□ 0.18
MSH2-206ENST00000543555 COL1A1P02452 1464 aaPredicted RBP16.17■□□□□ 0.18
MSH2-206ENST00000543555 GTF2E1P29083 439 aaPredicted RBP16.17■□□□□ 0.18
MSH2-206ENST00000543555 ADGRA1Q86SQ6 560 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 FMR1NBQ8N0W7 255 aaPredicted RBP16.17■□□□□ 0.18
MSH2-206ENST00000543555 MYL10Q9BUA6 226 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 ABCF2Q9UG63 623 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 CHD4Q14839 1912 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 CCDC69A6NI79 296 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 WTIPA6NIX2 430 aaPredicted RBP16.17■□□□□ 0.18
MSH2-206ENST00000543555 SPTLC2O15270 562 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 IARSP41252 1262 aaKnown RBP16.17■□□□□ 0.18
MSH2-206ENST00000543555 TFCP2L1Q9NZI6 479 aa16.17■□□□□ 0.18
MSH2-206ENST00000543555 RANBP6O60518 1105 aaKnown RBP16.16■□□□□ 0.18
MSH2-206ENST00000543555 STX1AQ16623 288 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 ZNF827Q17R98 1081 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 RC3H1Q5TC82 1133 aaKnown RBP16.16■□□□□ 0.18
MSH2-206ENST00000543555 ANO1Q5XXA6 986 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 KRT40Q6A162 431 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 CELF1Q92879 486 aaKnown RBP16.16■□□□□ 0.18
MSH2-206ENST00000543555 RAI14Q9P0K7 980 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 NHSQ6T4R5 1651 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 CASZ1Q86V15 1759 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 NID2Q14112 1375 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 CAVIN4Q5BKX8 364 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 RRP12Q5JTH9 1297 aaKnown RBP16.16■□□□□ 0.18
MSH2-206ENST00000543555 NARFQ9UHQ1 456 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 STK36Q9NRP7 1315 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 VPS37DQ86XT2 251 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 NYXQ9GZU5 481 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 RNF41Q9H4P4 317 aaPredicted RBP16.16■□□□□ 0.18
MSH2-206ENST00000543555 TOMM22Q9NS69 142 aa16.16■□□□□ 0.18
MSH2-206ENST00000543555 MAGEB6P1A0A0J9YX57 407 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 A0A1B0GVL5 298 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 RPS6KA4O75676 772 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 TPM3P06753 285 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 RFC4P35249 363 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 SART3Q15020 963 aaKnown RBP16.15■□□□□ 0.18
MSH2-206ENST00000543555 PIBF1Q8WXW3 757 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 MTA3Q9BTC8 594 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 TAF1P21675 1872 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 GOLGA6L6A8MZA4 724 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 PPARAQ07869 468 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 SPC24Q8NBT2 197 aa16.15■□□□□ 0.18
MSH2-206ENST00000543555 FAM84BQ96KN1 310 aaPredicted RBP16.15■□□□□ 0.18
MSH2-206ENST00000543555 PDGFDQ9GZP0 370 aaPredicted RBP16.15■□□□□ 0.18
MSH2-206ENST00000543555 ZPR1O75312 459 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 NDUFA8P51970 172 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 TRAPPC3LQ5T215 181 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 C11orf57Q6ZUT1 292 aaPredicted RBP16.14■□□□□ 0.17
MSH2-206ENST00000543555 SDR42E1Q8WUS8 393 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 ECM29Q5VYK3 1845 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 SSRP1Q08945 709 aaKnown RBP16.14■□□□□ 0.17
MSH2-206ENST00000543555 WTAPQ15007 396 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 IQCB1Q15051 598 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 SETDB2Q96T68 719 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 ZKSCAN3Q9BRR0 538 aa16.14■□□□□ 0.17
MSH2-206ENST00000543555 RIOK1Q9BRS2 568 aaKnown RBP16.14■□□□□ 0.17
MSH2-206ENST00000543555 IFNAR1P17181 557 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 TERF1P54274 439 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 TRIM29Q14134 588 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 MSL1Q68DK7 614 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 PLA2G4DQ86XP0 818 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 SLC26A6Q9BXS9 759 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 ANAPC4Q9UJX5 808 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 CACNA1SQ13698 1873 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 ERICH2A1L162 156 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 FMNL1O95466 1100 aaPredicted RBP16.13■□□□□ 0.17
MSH2-206ENST00000543555 TPM2P07951 284 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 ZNF75DP51815 510 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 SLC39A14Q15043 492 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 STK11IPQ8N1F8 1099 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 NLRP3Q96P20 1036 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 ANO10Q9NW15 660 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 R3HCC1Q9Y3T6 440 aaKnown RBP16.13■□□□□ 0.17
MSH2-206ENST00000543555 COL24A1Q17RW2 1714 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 RPS8P62241 208 aaKnown RBP16.13■□□□□ 0.17
MSH2-206ENST00000543555 AXDND1Q5T1B0 1012 aaPredicted RBP16.13■□□□□ 0.17
MSH2-206ENST00000543555 NBPF5PQ86XG9 351 aaPredicted RBP16.13■□□□□ 0.17
MSH2-206ENST00000543555 SDF4Q9BRK5 362 aa16.13■□□□□ 0.17
MSH2-206ENST00000543555 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.12■□□□□ 0.17
MSH2-206ENST00000543555 U2AF2P26368 475 aaKnown RBP eCLIP16.12■□□□□ 0.17
MSH2-206ENST00000543555 GNL2Q13823 731 aaKnown RBP16.12■□□□□ 0.17
MSH2-206ENST00000543555 RTN1Q16799 776 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 FBXO33Q7Z6M2 555 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 TMTC2Q8N394 836 aa16.12■□□□□ 0.17
MSH2-206ENST00000543555 TRIM5Q9C035 493 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms