RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	ADM5	C9JUS6	153 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	KIF3C	O14782	793 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	SLC4A8	Q2Y0W8	1093 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	VPS53	Q5VIR6	699 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	PRAMEF18	Q5VWM3	479 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	FAM83A	Q86UY5	434 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	ZFPM1	Q8IX07	1006 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	IFNL3	Q8IZI9	196 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	FAM151A	Q8WW52	585 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	TMEM39B	Q9GZU3	492 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	OSBPL5	Q9H0X9	879 aa	Predicted RBP	12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	NAPB	Q9H115	298 aa		12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.14	□□□□□ -0.47
CPSF7-221	ENST00000543545	FLT1	P17948	1338 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	MINDY4B	A8MYZ0	360 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	NPM3	O75607	178 aa	Known RBP	12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	HLA-DOA	P06340	250 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	HSPD1	P10809	573 aa	Known RBP	12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	TTC6	Q86TZ1	520 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	TRIM34	Q9BYJ4	488 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	IL25	Q9H293	177 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	PALD1	Q9ULE6	856 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	PPP2R3B	Q9Y5P8	575 aa		12.13	□□□□□ -0.47
CPSF7-221	ENST00000543545	USP17L12	C9JPN9	530 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	USP17L21	D6R901	530 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	EIF5B	O60841	1220 aa	Known RBP	12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	TOMM70	O94826	608 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	REC8	O95072	547 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	NF2	P35240	595 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	SUPT20HL1	Q3ZLR7	823 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	GIMAP6	Q6P9H5	292 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	DLK2	Q6UY11	383 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	SMC1B	Q8NDV3	1235 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	DSCC1	Q9BVC3	393 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	DHX36	Q9H2U1	1008 aa	Known RBP	12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	ZNF408	Q9H9D4	720 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	CTNNA3	Q9UI47	895 aa		12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.12	□□□□□ -0.47
CPSF7-221	ENST00000543545	WDR90	Q96KV7	1748 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CNTNAP1	P78357	1384 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	DDTL	A6NHG4	134 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	TRAF5	O00463	557 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	FGA	P02671	866 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CYP2D6	P10635	497 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	PTH1R	Q03431	593 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	TTLL12	Q14166	644 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	NBPF12	Q5TAG4	269 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CTR9	Q6PD62	1173 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	STK11IP	Q8N1F8	1099 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CDCA5	Q96FF9	252 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CSRNP1	Q96S65	589 aa		12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545		U3KPZ7	1027 aa	Predicted RBP	12.11	□□□□□ -0.47
CPSF7-221	ENST00000543545	CYP2D7	A0A087X1C5	515 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	ZNF213	O14771	459 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	SLC3A2	P08195	630 aa	Known RBP	12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	PRKG1	Q13976	671 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	ALX1	Q15699	326 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	MIGA2	Q7L4E1	593 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	SH3BP5L	Q7L8J4	393 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	RBM46	Q8TBY0	533 aa	Known RBP	12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	HOOK2	Q96ED9	719 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	PI4KB	Q9UBF8	816 aa		12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	MKRN1	Q9UHC7	482 aa	Known RBP	12.1	□□□□□ -0.47
CPSF7-221	ENST00000543545	FOXP2	O15409	715 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	PLCD1	P51178	756 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	HAND2	P61296	217 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	IMMT	Q16891	758 aa	Known RBP	12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	C12orf60	Q5U649	245 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	DCAF15	Q66K64	600 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	FOXP4	Q8IVH2	680 aa	Predicted RBP	12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	CDAN1	Q8IWY9	1227 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	MAP4K1	Q92918	833 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	LSG1	Q9H089	658 aa	Known RBP	12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	12.09	□□□□□ -0.47	8e-6	■■□□□ 11.4
CPSF7-221	ENST00000543545	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	RBM8A	Q9Y5S9	174 aa	Known RBP	12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	MYH13	Q9UKX3	1938 aa		12.09	□□□□□ -0.47
CPSF7-221	ENST00000543545	PPP1R12B	O60237	982 aa	Predicted RBP	12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	CELF2	O95319	508 aa	Known RBP	12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	CTDSPL2	Q05D32	466 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	FMR1	Q06787	632 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	PPARA	Q07869	468 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	C8orf34	Q49A92	452 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	SBK1	Q52WX2	424 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	DYNLL2	Q96FJ2	89 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	TEPSIN	Q96N21	525 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	MKNK2	Q9HBH9	465 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	TOMM22	Q9NS69	142 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	SERPINB13	Q9UIV8	391 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	PSME4	Q14997	1843 aa		12.08	□□□□□ -0.48
CPSF7-221	ENST00000543545	FAM196B	A6NMK8	535 aa		12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	ITGBL1	O95965	494 aa	Predicted RBP	12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	MCC	P23508	829 aa		12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	FSTL1	Q12841	308 aa		12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	RNF20	Q5VTR2	975 aa		12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	ARMC9	Q7Z3E5	817 aa		12.07	□□□□□ -0.48
CPSF7-221	ENST00000543545	ZNF341	Q9BYN7	854 aa		12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms